Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060614.seq
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0582 + 18993816-18993890,18994050-18994446,18995645-189957...    30   2.0  
08_02_0581 + 18986084-18986176,18986284-18986668,18986779-189868...    29   3.4  
09_03_0029 + 11724581-11724583,11726413-11726610,11726874-117270...    29   4.5  

>08_02_0582 +
           18993816-18993890,18994050-18994446,18995645-18995748,
           18995863-18996004,18996118-18996237,18996341-18996465,
           18996903-18997061,18997161-18997323,18997420-18997545,
           18997628-18997711,18997761-18998173,18998199-18998273,
           18998463-18998663,18998862-18998971,18999072-18999156,
           18999365-18999493,18999596-18999701,18999825-18999913,
           19000064-19000366
          Length = 1001

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 366 YMRVCVKYMVVYVMFSLLISCIFYALFKKNISIVHFFLY 250
           ++ +   YM+ +VMF  LI    + L   +I  V +FLY
Sbjct: 410 FLSLSAAYMMFFVMFGSLIGLDIFRLNSYSIQFVFYFLY 448


>08_02_0581 +
           18986084-18986176,18986284-18986668,18986779-18986861,
           18986966-18987110,18987823-18987951,18988047-18988171,
           18988261-18988419,18988503-18988665,18988750-18988875,
           18989110-18989471,18989572-18989772,18989873-18989982,
           18990079-18990163,18990298-18990426,18990505-18990610,
           18990688-18990776,18990885-18991184
          Length = 929

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 345 YMVVYVMFSLLISCIFYALFKKNISIVHFFLY 250
           YM+V+V+F  LI   F+      I  V +F+Y
Sbjct: 416 YMIVFVVFGSLIGLNFFKTNNYGIQFVFYFIY 447


>09_03_0029 +
           11724581-11724583,11726413-11726610,11726874-11727038,
           11727217-11727283,11727645-11727812,11728070-11728194,
           11728288-11728446,11728552-11728714,11728795-11728920,
           11729000-11729083,11729161-11729528,11729613-11729813,
           11729909-11730018,11730113-11730197,11730360-11730488,
           11730580-11730667,11730805-11730893,11730968-11731267
          Length = 875

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 366 YMRVCVKYMVVYVMFSLLISCIFYALFKKNISIVHFFLY 250
           +  + V YM  +V+F  LI   F+ L   +I    FF+Y
Sbjct: 331 FFALSVIYMTFFVIFGSLIGLNFFRLNDYSIQFAFFFIY 369


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,210,042
Number of Sequences: 37544
Number of extensions: 246628
Number of successful extensions: 383
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)