Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060614.seq
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18043| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.66 
SB_57295| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   1.5  
SB_35372| Best HMM Match : SpoIIIAC (HMM E-Value=1.3)                  29   4.6  
SB_18244| Best HMM Match : Fukutin-related (HMM E-Value=3.7)           29   4.6  

>SB_18043| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -1

Query: 459 IILKTNNLFSILNLTTHFKQ*KFDNKQKIHVYMRVCVKYMVVYVMFSLL-ISCIFYALF 286
           +I +TN    + N+   F       KQ I  Y RV VKY V  + F+L   +C++  +F
Sbjct: 60  LITETNTRAKLSNILAVFASSSLMLKQNIDKYYRVLVKYHVSRLRFALCPKNCVYARIF 118


>SB_57295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1320

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -1

Query: 303 IFYALFKKNISIVHFFLYSL*VWKISHYSVRAIFVKRDTKFLLHVLIYYYQHPNFTI 133
           ++  +  +N+SI  F++      +I  + + A  V   TKF LH     Y+HP FTI
Sbjct: 507 VYCYISPRNVSIKEFYM------RIFPHKLHAFRVSPRTKFTLHPPNSNYEHPAFTI 557


>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 13/66 (19%)
 Frame = -2

Query: 395  SLTISKKYMYICVCVSNTW*CM*CFLY*FHVSF---------MHYLK----KILALCTSS 255
            +L++S  Y+Y+CV V   + C+ C ++ F +S          MHYL     +I AL  S 
Sbjct: 1753 ALSVSLHYLYLCVFVFLPYLCL-CAIFVFALSLSLRYLCLRAMHYLYLCGIRIFALSVSL 1811

Query: 254  YILYKC 237
            + LY C
Sbjct: 1812 HYLYPC 1817


>SB_35372| Best HMM Match : SpoIIIAC (HMM E-Value=1.3)
          Length = 378

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 334 HYHVFDTHTHIYM 372
           HYHV+ TH H+YM
Sbjct: 24  HYHVYMTHYHVYM 36


>SB_18244| Best HMM Match : Fukutin-related (HMM E-Value=3.7)
          Length = 540

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 334 HYHVFDTHTHIYM 372
           HYHV+ TH H+YM
Sbjct: 24  HYHVYMTHYHVYM 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,211,637
Number of Sequences: 59808
Number of extensions: 343637
Number of successful extensions: 735
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)