Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060614.seq
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022975-5|AAB70672.1|  292|Caenorhabditis elegans Serpentine re...    30   1.8  
Z79754-1|CAB02090.1|  457|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U28971-5|AAA68379.1|  982|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AC024881-8|AAK71411.2|  318|Caenorhabditis elegans Serpentine re...    29   4.1  
U40945-1|AAA81719.2|  656|Caenorhabditis elegans Hypothetical pr...    28   5.4  

>AF022975-5|AAB70672.1|  292|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 13 protein.
          Length = 292

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
 Frame = -1

Query: 366 YMRVCVKYMVVYVMFSLLISCIFYALFKKNISIVHFFLYSL*VWKISHYSVRAI---FVK 196
           Y R  +  ++  ++   LI  IFY+LF + + ++   ++ L +   + Y+VR+I   F+ 
Sbjct: 41  YFRFLLDVILSVLVAVFLICGIFYSLFPEPLPLLQTLIFYLSLPASNIYAVRSILILFIS 100

Query: 195 RDTKFLLHVLIYYYQHPNF 139
            +    ++  I++Y+   F
Sbjct: 101 VERVIAVYFPIFFYKFHTF 119


>Z79754-1|CAB02090.1|  457|Caenorhabditis elegans Hypothetical
           protein F25H2.1 protein.
          Length = 457

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 244 ISVENFTLLRPRNFRKKGYKVFASRINI 161
           + ++  T  +PR FRK+ YKV   RIN+
Sbjct: 231 LPIKRITHCQPRRFRKQLYKVIIFRINV 258


>U28971-5|AAA68379.1|  982|Caenorhabditis elegans Hypothetical
           protein B0244.6 protein.
          Length = 982

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
 Frame = -1

Query: 444 NNLFSILNLTTHFKQ*KFDNKQKIHVYMRVCVKYMVVYVMFSLLISCIFYALFKKNISIV 265
           N  F  + L  + K      K+ + V  R CV   +   +  L++ CI Y  F    +  
Sbjct: 660 NVYFMTIVLPLYLKMSHSTQKRYVFVVSR-CVS-SISAALTLLILRCILYVYFPPGSTKS 717

Query: 264 HFFLYSL*VW--KISHYSVRAIFVKRDTKFLLHVL--IYYYQH 148
           ++FLY++ V    IS YS++  ++       + V+  +Y+  H
Sbjct: 718 NYFLYAVVVIVNDISFYSLQGSYIGMAVLLYIGVIHPVYFSTH 760


>AC024881-8|AAK71411.2|  318|Caenorhabditis elegans Serpentine
           receptor, class t protein53 protein.
          Length = 318

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 437 YSQFSI*PHTLNNKSLTISKKYMYICVC 354
           Y +++  PHT+NN SL     ++Y+  C
Sbjct: 189 YQEYTNIPHTINNFSLVFLTSFLYMFFC 216


>U40945-1|AAA81719.2|  656|Caenorhabditis elegans Hypothetical
           protein F10D7.1 protein.
          Length = 656

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -3

Query: 370 CIYACVCQIHGSVCNVFFIDFMYLLCII*KKY*HCALLLIFSISVENFT 224
           C++   C    ++C++ +I F YL+ I    + +CA LL+  I +  FT
Sbjct: 55  CVFLLACD---ALCSLCYI-FTYLINIFFSHFSNCASLLLEVIKMSTFT 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,190,296
Number of Sequences: 27780
Number of extensions: 290016
Number of successful extensions: 753
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)