Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060614.seq
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    25   0.67 
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    22   6.3  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    22   6.3  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    22   6.3  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    22   6.3  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    22   6.3  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    22   6.3  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    22   6.3  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    22   6.3  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    22   6.3  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    22   6.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   8.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   8.3  

>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 575 SRNSTIINLNYNFEHNYGSIVNAYTS 498
           S N+++ N NYN+ +NY +  N Y +
Sbjct: 83  SNNNSLSN-NYNYNNNYNNYNNNYNT 107


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 575 SRNSTIINLNYNFEHNYGS 519
           S N+++ N NYN+ +NY +
Sbjct: 83  SNNNSLSN-NYNYNNNYNN 100


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 575 SRNSTIINLNYNFEHNYGS 519
           S N+++ N NYN+ +NY +
Sbjct: 83  SNNNSLSN-NYNYNNNYNN 100


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 575 SRNSTIINLNYNFEHNYGS 519
           S N+++ N NYN+ +NY +
Sbjct: 83  SNNNSLSN-NYNYNNNYNN 100


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 575 SRNSTIINLNYNFEHNYGS 519
           S N+++ N NYN+ +NY +
Sbjct: 83  SNNNSLSN-NYNYNNNYNN 100


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 575 SRNSTIINLNYNFEHNYGS 519
           S N+++ N NYN+ +NY +
Sbjct: 83  SNNNSLSN-NYNYNNNYNN 100


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 575 SRNSTIINLNYNFEHNYGS 519
           S N+++ N NYN+ +NY +
Sbjct: 83  SNNNSLSN-NYNYNNNYNN 100


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 575 SRNSTIINLNYNFEHNYGS 519
           S N+++ N NYN+ +NY +
Sbjct: 83  SNNNSLSN-NYNYNNNYNN 100


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 575 SRNSTIINLNYNFEHNYGS 519
           S N+++ N NYN+ +NY +
Sbjct: 83  SNNNSLSN-NYNYNNNYNN 100


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 575 SRNSTIINLNYNFEHNYGS 519
           S N+++ N NYN+ +NY +
Sbjct: 316 SNNNSLSN-NYNYNNNYNN 333


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 575 SRNSTIINLNYNFEHNYGS 519
           S N+++ N NYN+ +NY +
Sbjct: 316 SNNNSLSN-NYNYNNNYNN 333


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 584  YRSSRNSTIINLNYNFEHNYGSIVNAYT 501
            Y +S  S+ I L++   HN G+ +  YT
Sbjct: 1411 YVTSSTSSSILLHWKSGHNGGASLTGYT 1438


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 584  YRSSRNSTIINLNYNFEHNYGSIVNAYT 501
            Y +S  S+ I L++   HN G+ +  YT
Sbjct: 1407 YVTSSTSSSILLHWKSGHNGGASLTGYT 1434


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 382 AKNTCIYACVCQIHGSVCN 326
           A N  IYA  C++H + C+
Sbjct: 119 ASNGKIYANHCELHRAACH 137


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 110 NLDRNHFNYN-QQCKLTKVNKMQLNLDNN 27
           N D NH+N+N  Q + +  +  Q N  +N
Sbjct: 419 NQDNNHYNHNHNQARHSSKSDNQNNNQHN 447


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 326 ITYTTMYLTHTRIYTCIF 379
           + Y T ++TH R   C+F
Sbjct: 163 VCYFTAHVTHPRHRLCVF 180


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,370
Number of Sequences: 438
Number of extensions: 3593
Number of successful extensions: 30
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)