Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060614.seq
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28250.1 68416.m03528 glycosyl hydrolase family protein 17 si...    31   0.54 
At3g47790.1 68416.m05206 ABC transporter family protein contains...    28   5.0  
At3g26000.1 68416.m03239 F-box family protein contains Pfam PF00...    27   8.8  
At1g64960.1 68414.m07363 expressed protein                             27   8.8  

>At3g28250.1 68416.m03528 glycosyl hydrolase family protein 17
           similar to glucan endo-1,3-beta-glucosidase precursor
           SP:P52409 from [Triticum aestivum]
          Length = 121

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 332 YTTMYLTHTRIYTCIFCLLSNFYCLK 409
           Y ++   +T IY   FCL+SN++C +
Sbjct: 82  YLSLLFHYTIIYVLFFCLISNYFCFR 107


>At3g47790.1 68416.m05206 ABC transporter family protein contains
           Pfam domain, PF00005: ABC transporter
          Length = 901

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -1

Query: 366 YMRVCVKYMVVYVMFSLLISCIFYALFKKNISIVHFFL 253
           ++ + + YM+ + +F  LI   F+ L   +I +V FF+
Sbjct: 369 FLLISILYMLCFAIFGSLIGLNFFRLNDYSIQLVFFFI 406


>At3g26000.1 68416.m03239 F-box family protein contains Pfam
           PF00646: F-box domain; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 453

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +2

Query: 371 CIFCLLSNFYCLKCVVKLRIENRLFVFNIICL*CS 475
           C  C+   ++C +C++    E  +F   ++C  CS
Sbjct: 412 CSLCIQRCYHCGRCIIDTEYE-EMFCLELLCAVCS 445


>At1g64960.1 68414.m07363 expressed protein
          Length = 1168

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +2

Query: 299  KIHEINKENITYTTMYLTHTRIYTCIFCLLSNFYCLKCV 415
            ++HEINKE++T T++ +   R Y+    LL +  C+K V
Sbjct: 1063 ELHEINKEDVTETSVCI-EKRDYSTALGLL-HLVCVKLV 1099


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,579,924
Number of Sequences: 28952
Number of extensions: 234714
Number of successful extensions: 408
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)