Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060613.seq
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148...    53   2e-07
09_04_0038 - 13996505-13996836,13997047-13997077,13997307-139974...    34   0.12 

>02_01_0003 +
           13079-13610,14005-14312,14364-14549,14620-14707,
           14807-14887,14980-15044,15357-15497,15578-15694,
           15995-16237,16326-16383,18127-18224
          Length = 638

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 23/43 (53%), Positives = 29/43 (67%)
 Frame = +3

Query: 87  QLDQLKSFVEICKTQPQLLHHPQLXFFKDYLISLGVSLPTATF 215
           ++ +L++FVE CK  P LL  P L FF+DYL SLG  LP A F
Sbjct: 230 RVGELRTFVEACKKDPSLLADPNLAFFRDYLESLGAHLPAAAF 272



 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 26/59 (44%), Positives = 34/59 (57%)
 Frame = +2

Query: 332 VIAPDQTDESQDMGDPNKEVTEXXXDESDXKRSEAMRAFSEQKXDEAXTLXTAAIQLDP 508
           ++  D  D  Q MGDP+ +VTE   D S   +S+AM A SE K +EA    T AI L+P
Sbjct: 331 IVESDHQDPPQKMGDPSIDVTEENRDASQEAKSKAMEAMSEGKLEEAIDHLTKAILLNP 389


>09_04_0038 -
           13996505-13996836,13997047-13997077,13997307-13997420,
           13997546-13997686,13997787-13997851,13997943-13998039,
           13998096-13998257,13998360-13998473,14001263-14001311,
           14001967-14002047,14003504-14003561,14003671-14004031,
           14004129-14004213,14004320-14004591,14004712-14004914,
           14005419-14005494
          Length = 746

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = +2

Query: 335 IAPDQTDESQDMGDPNKEVTEXXXDESDXKRSEAMRAFSEQK 460
           + PD  D  Q MGDP+ EV++   D++   +++ + AFSE K
Sbjct: 424 VEPDN-DPPQKMGDPSVEVSDEKRDQAQLCKNKGVDAFSEGK 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,518,301
Number of Sequences: 37544
Number of extensions: 207117
Number of successful extensions: 369
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)