Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060613.seq
         (683 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55147| Best HMM Match : TPR_2 (HMM E-Value=1.8e-10)                 35   0.053
SB_56887| Best HMM Match : TolA (HMM E-Value=0.66)                     28   6.1  

>SB_55147| Best HMM Match : TPR_2 (HMM E-Value=1.8e-10)
          Length = 559

 Score = 35.1 bits (77), Expect = 0.053
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +1

Query: 523 FAKRGQVYLKLNKPNACMTDCXHA*XLSCDSXTALTNFRGASXXGLG 663
           FAKR   ++++ KPNA + DC  A  ++ DS   +  +RG +   LG
Sbjct: 85  FAKRASCFIRMKKPNAAIRDCDKAAQINPDS-AQIYKWRGRAHEFLG 130


>SB_56887| Best HMM Match : TolA (HMM E-Value=0.66)
          Length = 404

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 344 DQTDESQDMGDPNKEVTEXXXDESDXKRSEAMRAFSEQKXDEA 472
           D+TD+  D  D  KE  +   +ESD   S +  + S    D++
Sbjct: 206 DKTDDDDDKKDAEKEDKDESGNESDSSSSSSSSSSSSSDDDDS 248


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,794,903
Number of Sequences: 59808
Number of extensions: 242187
Number of successful extensions: 428
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)