Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060613.seq
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83241-3|CAB05818.1|  422|Caenorhabditis elegans Hypothetical pr...    51   9e-07
Z81120-9|CAB03349.1|  422|Caenorhabditis elegans Hypothetical pr...    51   9e-07
AL023828-7|CAA19452.1|  881|Caenorhabditis elegans Hypothetical ...    29   3.1  

>Z83241-3|CAB05818.1|  422|Caenorhabditis elegans Hypothetical
           protein T12D8.8 protein.
          Length = 422

 Score = 50.8 bits (116), Expect = 9e-07
 Identities = 20/35 (57%), Positives = 26/35 (74%)
 Frame = +3

Query: 99  LKSFVEICKTQPQLLHHPQLXFFKDYLISLGVSLP 203
           LK FV +C+  P +LH P+  FFKDYL+SLG +LP
Sbjct: 7   LKQFVGMCQANPAVLHAPEFGFFKDYLVSLGATLP 41



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 24/60 (40%), Positives = 34/60 (56%)
 Frame = +2

Query: 329 GVIAPDQTDESQDMGDPNKEVTEXXXDESDXKRSEAMRAFSEQKXDEAXTLXTAAIQLDP 508
           GVI P++   +  MGD  KE TE   +++  +R +A  AFS    D A T  TAAI+ +P
Sbjct: 88  GVIEPEEA-VALPMGDSAKEATEDEIEKASEERGKAQEAFSNGDFDTALTHFTAAIEANP 146



 Score = 33.9 bits (74), Expect = 0.11
 Identities = 20/50 (40%), Positives = 26/50 (52%)
 Frame = +1

Query: 514 ALXFAKRGQVYLKLNKPNACMTDCXHA*XLSCDSXTALTNFRGASXXGLG 663
           A+  AKR  V LKL +P A + DC  A  ++ DS      FRG +   LG
Sbjct: 149 AMLHAKRANVLLKLKRPVAAIADCDKAISINPDSAQGY-KFRGRANRLLG 197


>Z81120-9|CAB03349.1|  422|Caenorhabditis elegans Hypothetical
           protein T12D8.8 protein.
          Length = 422

 Score = 50.8 bits (116), Expect = 9e-07
 Identities = 20/35 (57%), Positives = 26/35 (74%)
 Frame = +3

Query: 99  LKSFVEICKTQPQLLHHPQLXFFKDYLISLGVSLP 203
           LK FV +C+  P +LH P+  FFKDYL+SLG +LP
Sbjct: 7   LKQFVGMCQANPAVLHAPEFGFFKDYLVSLGATLP 41



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 24/60 (40%), Positives = 34/60 (56%)
 Frame = +2

Query: 329 GVIAPDQTDESQDMGDPNKEVTEXXXDESDXKRSEAMRAFSEQKXDEAXTLXTAAIQLDP 508
           GVI P++   +  MGD  KE TE   +++  +R +A  AFS    D A T  TAAI+ +P
Sbjct: 88  GVIEPEEA-VALPMGDSAKEATEDEIEKASEERGKAQEAFSNGDFDTALTHFTAAIEANP 146



 Score = 33.9 bits (74), Expect = 0.11
 Identities = 20/50 (40%), Positives = 26/50 (52%)
 Frame = +1

Query: 514 ALXFAKRGQVYLKLNKPNACMTDCXHA*XLSCDSXTALTNFRGASXXGLG 663
           A+  AKR  V LKL +P A + DC  A  ++ DS      FRG +   LG
Sbjct: 149 AMLHAKRANVLLKLKRPVAAIADCDKAISINPDSAQGY-KFRGRANRLLG 197


>AL023828-7|CAA19452.1|  881|Caenorhabditis elegans Hypothetical
           protein Y17G7B.5a protein.
          Length = 881

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +3

Query: 258 MKKKWNRHLTRNRSLNQM 311
           MKK ++RHLT NRS N++
Sbjct: 788 MKKTFSRHLTENRSANEL 805


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,701,601
Number of Sequences: 27780
Number of extensions: 186420
Number of successful extensions: 354
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)