Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060613.seq
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containi...    50   1e-06
At3g17880.1 68416.m02278 tetratricoredoxin (TDX) identical to te...    50   1e-06
At1g42470.1 68414.m04897 patched family protein similar to SP|O1...    32   0.41 
At3g51480.1 68416.m05638 glutamate receptor family protein (GLR3...    29   2.9  
At3g17340.1 68416.m02216 importin-related contains Pfam profile ...    29   2.9  
At4g38350.1 68417.m05422 patched family protein similar to SP|O1...    28   6.6  
At5g43120.1 68418.m05264 tetratricopeptide repeat (TPR)-containi...    27   8.8  

>At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containing
           protein similar to Hsc70-interacting protein (Hip) from
           {Homo sapiens} SP|P50502, {Rattus norvegicus} SP|P50503;
           contains Pfam profile PF00515: tetratricopeptide repeat
           (TPR) domain
          Length = 441

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 21/40 (52%), Positives = 28/40 (70%)
 Frame = +3

Query: 87  QLDQLKSFVEICKTQPQLLHHPQLXFFKDYLISLGVSLPT 206
           +L +LK F++ CK+ P LL  P L FF+DYL SLG  +PT
Sbjct: 5   KLSELKVFIDQCKSDPSLLTTPSLSFFRDYLESLGAKIPT 44



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 23/58 (39%), Positives = 31/58 (53%)
 Frame = +2

Query: 335 IAPDQTDESQDMGDPNKEVTEXXXDESDXKRSEAMRAFSEQKXDEAXTLXTAAIQLDP 508
           + PD  D  Q MGD + EVT+   + +   + +AM A SE   DEA    T AI L+P
Sbjct: 98  VEPDN-DPPQKMGDSSVEVTDENREAAQEAKGKAMEALSEGNFDEAIEHLTRAITLNP 154



 Score = 34.3 bits (75), Expect = 0.076
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +1

Query: 496 TIRSXXALXFAKRGQVYLKLNKPNACMTDCXHA*XLSCDSXTALTNFRGASXXGLG 663
           T+    A+ +  R  VY+KL KPNA + D   A  ++ DS     + RG +   LG
Sbjct: 151 TLNPTSAIMYGNRASVYIKLKKPNAAIRDANAALEINPDSAKGYKS-RGMARAMLG 205


>At3g17880.1 68416.m02278 tetratricoredoxin (TDX) identical to
           tetratricoredoxin [Arabidopsis thaliana] GI:18041544;
           similar to SP|Q42443 Thioredoxin H-type (TRX-H) (Phloem
           sap 13 kDa protein-1) {Oryza sativa}; contains Pfam
           profile: PF00085 Thioredoxin
          Length = 380

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 24/59 (40%), Positives = 36/59 (61%)
 Frame = +2

Query: 332 VIAPDQTDESQDMGDPNKEVTEXXXDESDXKRSEAMRAFSEQKXDEAXTLXTAAIQLDP 508
           V+ PD  +  Q MGDP  EVT+   D++  ++S+AM A S+ + DEA    T A+ L+P
Sbjct: 86  VVEPDN-EPPQPMGDPTAEVTDENRDDAQSEKSKAMEAISDGRFDEAIEHLTKAVMLNP 143



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 23/61 (37%), Positives = 33/61 (54%)
 Frame = +3

Query: 87  QLDQLKSFVEICKTQPQLLHHPQLXFFKDYLISLGVSLPTATFGAKDFTAAGDXKSAMKK 266
           Q+ +L+ FVE  K  P +LH P L FFK+YL SLG  +P      +D+    + K +   
Sbjct: 6   QVAELRRFVEQLKLNPSILHDPSLVFFKEYLRSLGAQVPKIEKTERDYEDKAETKPSFSP 65

Query: 267 K 269
           K
Sbjct: 66  K 66



 Score = 31.5 bits (68), Expect = 0.54
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +1

Query: 514 ALXFAKRGQVYLKLNKPNACMTDCXHA*XLSCDSXTALTNFRGASXXGLG 663
           A+ +A R  V+LK+ KPNA + D   A   + DS     + RG +   LG
Sbjct: 146 AILYATRASVFLKVKKPNAAIRDANVALQFNSDSAKGYKS-RGMAKAMLG 194


>At1g42470.1 68414.m04897 patched family protein similar to
           SP|O15118 Niemann-Pick C1 protein precursor from Homo
           sapiens (GB:AAB63982) (GI:2276463); contains Pfam
           profile PF02460 Patched family
          Length = 1272

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +2

Query: 14  YLLNFDFCD*RNLQRKMSCPYNAAAIRPVEILCGNM*NTAATIT 145
           Y   +D C  R+  + ++CP+N  +++P ++L   + +   TIT
Sbjct: 18  YCAMYDICGARSDGKVLNCPFNIPSVKPDDLLSSKIQSLCPTIT 61


>At3g51480.1 68416.m05638 glutamate receptor family protein (GLR3.6)
           plant glutamate receptor family, PMID:11379626
          Length = 903

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +3

Query: 27  LIFAINETYKEK*VARTTLQQLDQLKSFVEICKTQPQLLHHPQLXFFKDYLI 182
           ++  IN +Y     +  T+ QL      +E  +T    + +PQ  F +DYLI
Sbjct: 647 VVLIINSSYTASLTSILTVHQLSSPIKGIETLQTNHDPIGYPQGSFVRDYLI 698


>At3g17340.1 68416.m02216 importin-related contains Pfam profile
           PF03810: Importin-beta N-terminal domain
          Length = 822

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 344 DQTDESQDMGDPNKEVTEXXXDESDXKRSEA 436
           ++TD+ +D G+P +E TE    +S+ + SE+
Sbjct: 701 EETDDDEDDGEPGEEETESEETDSNDEDSES 731


>At4g38350.1 68417.m05422 patched family protein similar to
           SP|O15118 Niemann-Pick C1 protein precursor from Homo
           sapiens (PID:g2276463); contains Pfam profile PF02460
           Patched family
          Length = 1064

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +2

Query: 26  FDFCD*RNLQRKMSCPYNAAAIRPVEILCGNM*NTAATIT 145
           +D C  R+  + ++CPY + +I+P E+    + +   TI+
Sbjct: 2   YDICGHRSDGKVLNCPYASPSIQPDELFSAKIQSLCPTIS 41


>At5g43120.1 68418.m05264 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 588

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 487 CSHTIRSXXALXFAKRGQVYLKLNKPNACMTDCXHA*XLS 606
           C   +R      +++RG+ YL L   +A ++DC  A  LS
Sbjct: 454 CPLKLRRKRMNLYSERGECYLLLGDVDAAISDCTRALCLS 493


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,904,246
Number of Sequences: 28952
Number of extensions: 168285
Number of successful extensions: 278
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)