Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060612.seq
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    27   2.5  
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    26   4.4  
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     25   7.7  

>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +3

Query: 312 LITKEGVIQLIMKSKLPYAV 371
           L+ K+GV+ L+ K KLP++V
Sbjct: 542 LLVKDGVVHLVDKVKLPFSV 561


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/58 (25%), Positives = 32/58 (55%)
 Frame = +1

Query: 79  EDTFTLRYVLEQGNLQVKFVAKDIASSLKYVNCKQAVIVNVDKKYKTTYSESGSIPYT 252
           E +FTL+ ++E G  + +    DIA +L++++ +Q         Y+  Y+  G+ P++
Sbjct: 386 ETSFTLQALVESGLYEKEAFKPDIAKALEFLDRQQIRTQYEGSGYR--YNSLGAWPFS 441


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +1

Query: 187 VIVNVDKKYKTTYSESGSIPYTPLQTTWSSKVTHCTCSRT 306
           +++ +   +KTT+ E  S+P+  ++   S+  TH   S T
Sbjct: 83  ILLAIPVWWKTTHYERSSLPFEDMENAPSTVQTHLRFSPT 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,540,064
Number of Sequences: 5004
Number of extensions: 50068
Number of successful extensions: 138
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)