Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060612.seq
(682 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_58921| Best HMM Match : DUF286 (HMM E-Value=4.9) 30 1.5
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_20114| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_9262| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_30429| Best HMM Match : DUF286 (HMM E-Value=9.8) 28 8.0
>SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 429
Score = 33.1 bits (72), Expect = 0.21
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Frame = -1
Query: 322 LVMSTVCGCRYSGSPCLTTLSGAGYMV*TPTRCTSFC------IFCQH*LSQLVYNLHIL 161
+VM TVC CRY S C++ S ++ T C S C + C S+ V+++ +
Sbjct: 246 VVMCTVCACRYVHSVCVSLRSQCVRVI-MYTVCVSLCAQCMRVVMCTVCASRYVHSVCVS 304
Query: 160 NCWRCL 143
C +C+
Sbjct: 305 LCTQCM 310
>SB_58921| Best HMM Match : DUF286 (HMM E-Value=4.9)
Length = 352
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 199 VDKKYKTTYSESGSIPYTPLQTTWSSKVTHCTCSRTQCSS 318
+D+ +TY SG I Y LQT W+++V+ T + Q S
Sbjct: 155 LDQSCISTYERSGPIVYLYLQTIWTNRVSLLTNALDQSIS 194
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +1
Query: 184 AVIVN-VDKKYKTTYSESGSIPYTPLQTTWSSKVTHCT 294
+++ N +D+ +TY SG I Y L+T WS++V+ T
Sbjct: 115 SILTNALDQSCISTYERSGPIVYLYLRTLWSNRVSLLT 152
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 199 VDKKYKTTYSESGSIPYTPLQTTWSSKVTHCT 294
+D+ +TY SG I Y L+T W+++V+ T
Sbjct: 53 LDQSCISTYKRSGPIVYLYLRTLWTNRVSLLT 84
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 202 DKKYKTTYSESGSIPYTPLQTTWSSKVTHCT 294
D+ +TY SG I Y L+T W+++V+ T
Sbjct: 20 DQSCISTYKRSGPIVYLYLRTLWTNRVSLLT 50
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +1
Query: 58 IGEFKFGEDTFTLRYVLEQGNLQVKFVAKDIASSLKYVNCKQAVIVNVDKKYKT 219
I +F+FG ++ + ++KF AK+IA + K++ QAV ++ K Y T
Sbjct: 116 IPDFRFGCSDLYFVCLMTPKSTEIKFDAKEIADA-KWMETSQAVYLDKGKYYYT 168
>SB_20114| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 216 NDVQRVGVYTIYPAPDNVVKQGDPLYLQ 299
N R +Y + PAP N GDPL L+
Sbjct: 6 NVTNRDTIYKVLPAPSNSCSPGDPLVLE 33
>SB_9262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 286
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +1
Query: 184 AVIVN-VDKKYKTTYSESGSIPYTPLQTTWSSKVTHCT 294
+++ N +D+ +TY SG I Y L+T W+++V+ T
Sbjct: 35 SILTNALDQSCISTYERSGPIVYLYLRTLWTNRVSLLT 72
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 199 VDKKYKTTYSESGSIPYTPLQTTWSSKVTHCT 294
+D+ +TY SG I Y L+T W+++V+ T
Sbjct: 75 LDQSCISTYERSGPIVYLYLRTLWTNRVSLLT 106
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 199 VDKKYKTTYSESGSIPYTPLQTTWSSKVTHCT 294
+D+ +TY SG I Y L+T W+++V+ T
Sbjct: 109 LDQSCISTYERSGPIVYLYLRTLWTNRVSLLT 140
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 199 VDKKYKTTYSESGSIPYTPLQTTWSSKVTHCT 294
+D+ +TY SG I Y L+T W+++V+ T
Sbjct: 143 LDQSCISTYERSGPIVYLYLRTLWTNRVSLLT 174
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 199 VDKKYKTTYSESGSIPYTPLQTTWSSKVTHCT 294
+D+ +TY SG I Y L+T W+++V+ T
Sbjct: 177 LDQSCISTYERSGPIVYLYLRTLWTNRVSLLT 208
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 199 VDKKYKTTYSESGSIPYTPLQTTWSSKVTHCT 294
+D+ +TY SG I Y L+T W+++V+ T
Sbjct: 211 LDQSCISTYERSGPIVYLYLRTLWTNRVSLLT 242
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 199 VDKKYKTTYSESGSIPYTPLQTTWSSKVT 285
+D+ +TY SG I Y L+T W+++V+
Sbjct: 245 LDQSCISTYERSGPIVYLYLRTLWTNRVS 273
>SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4275
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 70 KFGEDTFTLRYVLEQGNLQVKFVAKDIASSLKYVNCKQAVIVNVDKKYKTTYSE 231
K GED F + +L++G V V D+ +S CK+ ++ Y+ Y E
Sbjct: 2045 KIGEDAFQVFSILQKGKGVVVDVPGDVFNSFVESGCKREILERCFDMYR-AYKE 2097
>SB_30429| Best HMM Match : DUF286 (HMM E-Value=9.8)
Length = 283
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 199 VDKKYKTTYSESGSIPYTPLQTTWSSKVTHCT 294
+D+ TY+ SG I Y L+T W+++V+ T
Sbjct: 133 LDQSCICTYARSGPIVYLYLRTPWTNRVSLLT 164
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,177,097
Number of Sequences: 59808
Number of extensions: 416799
Number of successful extensions: 915
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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