Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060612.seq
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    25   0.51 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   4.7  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          21   8.2  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +1

Query: 202 DKKYKTTYSESGSIPYTPLQTTWSSKVTHCTCSR 303
           D+K  T Y+    I  TP + +W S   H + ++
Sbjct: 134 DEKISTLYALGAKIIRTPTEASWHSPEAHISVAQ 167


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = -3

Query: 497 QTPTFYLTLQSHHNLCPS*RPARTCPCTALRNHLLQQPRLQFHSVRELALHN*LDNTLLG 318
           QT   Y   Q+H  LCP+  P  T        HL      +  S R  +  N  ++ ++G
Sbjct: 367 QTSVHYSNGQTHSQLCPT--PRST--------HLKVSGINRVGSTRRPSRRNSCESQMMG 416

Query: 317 DEHCVR 300
           DE  +R
Sbjct: 417 DEMSLR 422


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +3

Query: 297 QPHTVLITKEGVIQL 341
           +PHT L+T++ +++L
Sbjct: 127 RPHTYLVTRQKLLEL 141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,509
Number of Sequences: 438
Number of extensions: 3587
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)