Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060612.seq
         (682 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01640.1 68417.m00213 hypothetical protein                          30   1.2  
At2g34280.1 68415.m04194 S locus F-box-related / SLF-related con...    30   1.2  
At5g19720.1 68418.m02345 tRNA synthetase class I (E and Q) famil...    29   2.2  
At2g19190.1 68415.m02239 light-responsive receptor protein kinas...    28   5.0  

>At4g01640.1 68417.m00213 hypothetical protein 
          Length = 300

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = -3

Query: 371 HSVRELALHN*LDNTLLGDEHCVRLQVQWVTLLDHVVWSGVYGID 237
           +S REL + N LD+ L   E     QV W    DH  W  +Y ID
Sbjct: 185 YSSRELIMCN-LDDRLCVSEKMWPNQVIWSLDSDHKTWKEIYSID 228


>At2g34280.1 68415.m04194 S locus F-box-related / SLF-related
           contains Pfam PF00646: F-box domain; contains weak hit
           to TIGRFAM TIGR01640 : F-box protein interaction domain;
           weakly similar to  self-incompatibility (S-) locus F-box
           (GI:29420811) [Prunus mume]
          Length = 391

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = -3

Query: 371 HSVRELALHN*LDNTLLGDEHCVRLQVQWVTLLDHVVWSGVYGID 237
           +S REL + N LD+ L   E     QV W    DH  W  +Y ID
Sbjct: 276 YSSRELIMCN-LDDRLCVSEKMWPNQVIWSLDSDHKTWKEIYSID 319


>At5g19720.1 68418.m02345 tRNA synthetase class I (E and Q) family
           protein similar to tRNA-glutamine synthetase [Lupinus
           luteus] GI:2995455; contains Pfam profile PF03950: tRNA
           synthetases class I (E and Q), anti-codon binding domain
          Length = 170

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 326 LLGDEHCVRLQVQWVTLLDHVVWSGVYGIDPDSLYVVLYFLSTLTI 189
           L   E+   L   W+T ++  + SG Y +D DS+   L F  T+T+
Sbjct: 116 LFNSENPAELNDDWLTDINPQLQSGYYTVDKDSIPGKLVFNRTVTL 161


>At2g19190.1 68415.m02239 light-responsive receptor protein kinase /
            senescence-responsive receptor-like serine/threonine
            kinase, putative (SIRK) similar to light repressible
            receptor protein kinase [Arabidopsis thaliana]
            gi|1321686|emb|CAA66376; contains Pfam profiles PF00069:
            Protein kinase domain and PF00560: Leucine Rich Repeat
          Length = 876

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
 Frame = +3

Query: 213  QNDVQRVGVY---TIYPAPDNVVKQGDPLYLQPHTVLITKEGVIQLIMKSKLPYAVEL-Q 380
            ++DV  +GV     I   P     + + +++  H   I   G I+ I+  +L    ++  
Sbjct: 754  KSDVYSLGVVLLEVITGQPAIASSKTEKVHISDHVRSILANGDIRGIVDQRLRERYDVGS 813

Query: 381  AWLLEEVIPQCCARASTRRPSRWTQIMV*LK 473
            AW + E+   C    S +RP+  +Q+++ LK
Sbjct: 814  AWKMSEIALACTEHTSAQRPT-MSQVVMELK 843


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,726,527
Number of Sequences: 28952
Number of extensions: 277005
Number of successful extensions: 624
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)