Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060610.seq
         (628 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    24   1.2  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    23   2.1  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   6.4  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 382 DFEQEMXTAYPAAPSRSLTNFPTVRSSLSE 471
           DFE  +   Y   P+++ TN PT R    E
Sbjct: 357 DFELLIKGVYQVNPTKTRTNLPTHRHPQDE 386


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/32 (25%), Positives = 17/32 (53%)
 Frame = +1

Query: 364 LWYVALDFEQEMXTAYPAAPSRSLTNFPTVRS 459
           +WY   + ++E  T   +  SR+   +PT+ +
Sbjct: 29  IWYWQCNTDEETCTRISSTVSRNTDTYPTLET 60


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +3

Query: 120 RHPSRALAVRVRSYHRYXCWTPATVSPTPCPSTKDTHSPTPS 245
           R+P  A  V   +++     TP +V     PS    HS +P+
Sbjct: 294 RYPPLAQGVNDDAFNSVATPTPTSVMTELYPSPVPGHSTSPN 335


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,131
Number of Sequences: 336
Number of extensions: 2637
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)