Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060610.seq
(628 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 180 1e-45
SB_56| Best HMM Match : Actin (HMM E-Value=0) 180 1e-45
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 180 1e-45
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 179 1e-45
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 101 2e-37
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 132 3e-31
SB_54| Best HMM Match : Actin (HMM E-Value=0) 131 5e-31
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 116 2e-26
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 99 3e-21
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 95 4e-20
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 72 4e-13
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 50 2e-06
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 39 0.004
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 34 0.082
SB_51831| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06) 30 1.3
SB_43791| Best HMM Match : Hep_59 (HMM E-Value=0.54) 29 2.3
SB_36117| Best HMM Match : Rubredoxin (HMM E-Value=1.8) 29 2.3
SB_49291| Best HMM Match : Herpes_UL69 (HMM E-Value=4.5) 28 5.4
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_40649| Best HMM Match : AT_hook (HMM E-Value=3.7) 28 7.1
SB_56505| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_18956| Best HMM Match : SCAN (HMM E-Value=3.6) 27 9.4
SB_10144| Best HMM Match : Extensin_2 (HMM E-Value=0.79) 27 9.4
SB_23172| Best HMM Match : DNA_RNApol_7kD (HMM E-Value=5.3) 27 9.4
SB_15491| Best HMM Match : zf-C3HC4 (HMM E-Value=0.079) 27 9.4
SB_3866| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41) 27 9.4
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 180 bits (437), Expect = 1e-45
Identities = 96/134 (71%), Positives = 98/134 (73%)
Frame = +1
Query: 7 SPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASXXXXXXXXXXX 186
+PEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQAVLSLYAS
Sbjct: 98 APEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSG 157
Query: 187 XXCLPHRAHLRRIRTPPRHPASGLAGXDLTDYLMKILTERGYSFTTTAEREIVRDIKEKL 366
P LAG DLTDYLMKILTERGYSFTTTAEREIVRDIKEKL
Sbjct: 158 DGVTHTVPIYEGYALPHAIIRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKL 217
Query: 367 WYVALDFEQEMXTA 408
YVALDFEQEM TA
Sbjct: 218 CYVALDFEQEMETA 231
Score = 82.2 bits (194), Expect = 3e-16
Identities = 38/54 (70%), Positives = 40/54 (74%)
Frame = +3
Query: 423 LEKSYELPDGQVITXGNXRFRCXEVLFQPCSWVWKLAGFHXTTYXSIXKCDVDI 584
LEKSYELPDGQVIT GN RFRC E +FQP + AG H TTY SI KCDVDI
Sbjct: 237 LEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDI 290
Score = 56.4 bits (130), Expect = 2e-08
Identities = 23/26 (88%), Positives = 26/26 (100%)
Frame = +2
Query: 176 LDSGDGVSHTVPIYEGYALPHAILRL 253
+DSGDGV+HTVPIYEGYALPHAI+RL
Sbjct: 154 MDSGDGVTHTVPIYEGYALPHAIIRL 179
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 180 bits (437), Expect = 1e-45
Identities = 96/134 (71%), Positives = 98/134 (73%)
Frame = +1
Query: 7 SPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASXXXXXXXXXXX 186
+PEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQAVLSLYAS
Sbjct: 97 APEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSG 156
Query: 187 XXCLPHRAHLRRIRTPPRHPASGLAGXDLTDYLMKILTERGYSFTTTAEREIVRDIKEKL 366
P LAG DLTDYLMKILTERGYSFTTTAEREIVRDIKEKL
Sbjct: 157 DGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKL 216
Query: 367 WYVALDFEQEMXTA 408
YVALDFEQEM TA
Sbjct: 217 CYVALDFEQEMQTA 230
Score = 82.2 bits (194), Expect = 3e-16
Identities = 38/54 (70%), Positives = 40/54 (74%)
Frame = +3
Query: 423 LEKSYELPDGQVITXGNXRFRCXEVLFQPCSWVWKLAGFHXTTYXSIXKCDVDI 584
LEKSYELPDGQVIT GN RFRC E +FQP + AG H TTY SI KCDVDI
Sbjct: 236 LEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDI 289
Score = 57.2 bits (132), Expect = 1e-08
Identities = 24/26 (92%), Positives = 26/26 (100%)
Frame = +2
Query: 176 LDSGDGVSHTVPIYEGYALPHAILRL 253
+DSGDGV+HTVPIYEGYALPHAILRL
Sbjct: 153 MDSGDGVTHTVPIYEGYALPHAILRL 178
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 180 bits (437), Expect = 1e-45
Identities = 96/134 (71%), Positives = 98/134 (73%)
Frame = +1
Query: 7 SPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASXXXXXXXXXXX 186
+PEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQAVLSLYAS
Sbjct: 98 APEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSG 157
Query: 187 XXCLPHRAHLRRIRTPPRHPASGLAGXDLTDYLMKILTERGYSFTTTAEREIVRDIKEKL 366
P LAG DLTDYLMKILTERGYSFTTTAEREIVRDIKEKL
Sbjct: 158 DGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKL 217
Query: 367 WYVALDFEQEMXTA 408
YVALDFEQEM TA
Sbjct: 218 CYVALDFEQEMTTA 231
Score = 82.2 bits (194), Expect = 3e-16
Identities = 38/54 (70%), Positives = 40/54 (74%)
Frame = +3
Query: 423 LEKSYELPDGQVITXGNXRFRCXEVLFQPCSWVWKLAGFHXTTYXSIXKCDVDI 584
LEKSYELPDGQVIT GN RFRC E +FQP + AG H TTY SI KCDVDI
Sbjct: 237 LEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDI 290
Score = 57.2 bits (132), Expect = 1e-08
Identities = 24/26 (92%), Positives = 26/26 (100%)
Frame = +2
Query: 176 LDSGDGVSHTVPIYEGYALPHAILRL 253
+DSGDGV+HTVPIYEGYALPHAILRL
Sbjct: 154 MDSGDGVTHTVPIYEGYALPHAILRL 179
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 179 bits (436), Expect = 1e-45
Identities = 96/134 (71%), Positives = 98/134 (73%)
Frame = +1
Query: 7 SPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASXXXXXXXXXXX 186
+PEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQAVLSLYAS
Sbjct: 97 APEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSG 156
Query: 187 XXCLPHRAHLRRIRTPPRHPASGLAGXDLTDYLMKILTERGYSFTTTAEREIVRDIKEKL 366
P LAG DLTDYLMKILTERGYSFTTTAEREIVRDIKEKL
Sbjct: 157 DGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKL 216
Query: 367 WYVALDFEQEMXTA 408
YVALDFEQEM TA
Sbjct: 217 AYVALDFEQEMATA 230
Score = 82.2 bits (194), Expect = 3e-16
Identities = 38/54 (70%), Positives = 40/54 (74%)
Frame = +3
Query: 423 LEKSYELPDGQVITXGNXRFRCXEVLFQPCSWVWKLAGFHXTTYXSIXKCDVDI 584
LEKSYELPDGQVIT GN RFRC E +FQP + AG H TTY SI KCDVDI
Sbjct: 236 LEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDI 289
Score = 57.2 bits (132), Expect = 1e-08
Identities = 24/26 (92%), Positives = 26/26 (100%)
Frame = +2
Query: 176 LDSGDGVSHTVPIYEGYALPHAILRL 253
+DSGDGV+HTVPIYEGYALPHAILRL
Sbjct: 153 MDSGDGVTHTVPIYEGYALPHAILRL 178
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 101 bits (241), Expect(2) = 2e-37
Identities = 47/49 (95%), Positives = 49/49 (100%)
Frame = +1
Query: 7 SPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS 153
+PEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQAVLSLYAS
Sbjct: 98 APEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYAS 146
Score = 78.6 bits (185), Expect = 4e-15
Identities = 36/54 (66%), Positives = 39/54 (72%)
Frame = +3
Query: 423 LEKSYELPDGQVITXGNXRFRCXEVLFQPCSWVWKLAGFHXTTYXSIXKCDVDI 584
+EKSYELPDGQVIT GN RFRC E L QP + +G H TTY SI KCDVDI
Sbjct: 210 IEKSYELPDGQVITIGNERFRCPEALLQPSFLGMESSGIHETTYNSIMKCDVDI 263
Score = 72.9 bits (171), Expect(2) = 2e-37
Identities = 36/47 (76%), Positives = 38/47 (80%)
Frame = +1
Query: 268 DLTDYLMKILTERGYSFTTTAEREIVRDIKEKLWYVALDFEQEMXTA 408
D + + I ERGYSFTTTAEREIVRDIKEKL YVALDFEQEM TA
Sbjct: 158 DGVSHTVPIYEERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTA 204
Score = 35.9 bits (79), Expect = 0.027
Identities = 16/20 (80%), Positives = 18/20 (90%), Gaps = 2/20 (10%)
Frame = +2
Query: 176 LDSGDGVSHTVPIYE--GYA 229
+DSGDGVSHTVPIYE GY+
Sbjct: 154 MDSGDGVSHTVPIYEERGYS 173
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 132 bits (318), Expect = 3e-31
Identities = 74/116 (63%), Positives = 77/116 (66%)
Frame = +1
Query: 61 NREKMTQIMFETFNTPAMYVAIQAVLSLYASXXXXXXXXXXXXXCLPHRAHLRRIRTPPR 240
N + M +IMFETFN+PAMYVAIQAVLSLYAS P
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHA 137
Query: 241 HPASGLAGXDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLWYVALDFEQEMXTA 408
LAG DLTDYLMKILTERGYSFTTTAEREIVRDIKEKL YVALDFEQEM TA
Sbjct: 138 IIRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTA 193
Score = 82.2 bits (194), Expect = 3e-16
Identities = 38/54 (70%), Positives = 40/54 (74%)
Frame = +3
Query: 423 LEKSYELPDGQVITXGNXRFRCXEVLFQPCSWVWKLAGFHXTTYXSIXKCDVDI 584
LEKSYELPDGQVIT GN RFRC E +FQP + AG H TTY SI KCDVDI
Sbjct: 199 LEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDI 252
Score = 56.4 bits (130), Expect = 2e-08
Identities = 23/26 (88%), Positives = 26/26 (100%)
Frame = +2
Query: 176 LDSGDGVSHTVPIYEGYALPHAILRL 253
+DSGDGV+HTVPIYEGYALPHAI+RL
Sbjct: 116 MDSGDGVTHTVPIYEGYALPHAIIRL 141
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 131 bits (316), Expect = 5e-31
Identities = 66/132 (50%), Positives = 85/132 (64%)
Frame = +1
Query: 13 EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASXXXXXXXXXXXXX 192
E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA+QAV++LYAS
Sbjct: 2144 EDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALYASGRTTGTVFDCGDG 2203
Query: 193 CLPHRAHLRRIRTPPRHPASGLAGXDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLWY 372
P LAG DLT YL +++TERGYSF +TAE++I+RD+KE L Y
Sbjct: 2204 VSHTVPVYDGYWLPHATQRIDLAGRDLTHYLQRLVTERGYSFQSTAEQQIIRDLKETLCY 2263
Query: 373 VALDFEQEMXTA 408
A+D+E+E+ A
Sbjct: 2264 CAMDYERELKEA 2275
Score = 53.6 bits (123), Expect = 1e-07
Identities = 25/53 (47%), Positives = 31/53 (58%)
Frame = +3
Query: 426 EKSYELPDGQVITXGNXRFRCXEVLFQPCSWVWKLAGFHXTTYXSIXKCDVDI 584
E Y LPDGQ I G+ RFR E LFQP + G H + + SI KCD+D+
Sbjct: 2282 EAPYMLPDGQSIRIGSERFRAAEPLFQPSLLGRDIDGIHESIFKSIKKCDIDL 2334
Score = 46.0 bits (104), Expect = 3e-05
Identities = 18/25 (72%), Positives = 21/25 (84%)
Frame = +2
Query: 179 DSGDGVSHTVPIYEGYALPHAILRL 253
D GDGVSHTVP+Y+GY LPHA R+
Sbjct: 2199 DCGDGVSHTVPVYDGYWLPHATQRI 2223
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 116 bits (279), Expect = 2e-26
Identities = 64/106 (60%), Positives = 70/106 (66%)
Frame = +1
Query: 82 IMFETFNTPAMYVAIQAVLSLYASXXXXXXXXXXXXXCLPHRAHLRRIRTPPRHPASGLA 261
IMFE FN+PA+YVAIQAVLSLYAS + P LA
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGVVFDSGDGVSHNVPIYEGYALPHAILRLDLA 60
Query: 262 GXDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLWYVALDFEQEM 399
G DLTDYLMK++TERGYSFTTTAEREIVRDIKEKL YVALDF QE+
Sbjct: 61 GRDLTDYLMKLMTERGYSFTTTAEREIVRDIKEKLCYVALDFYQEI 106
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 98.7 bits (235), Expect = 3e-21
Identities = 55/133 (41%), Positives = 70/133 (52%)
Frame = +1
Query: 10 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASXXXXXXXXXXXX 189
P VLLTE PLNP NREKM ++MFE + +Y+AIQAVL+LYA
Sbjct: 102 PRNTKVLLTEPPLNPMKNREKMIEVMFENYQFEGVYIAIQAVLTLYAQGLLTGVVIDSGD 161
Query: 190 XCLPHRAHLRRIRTPPRHPASGLAGXDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLW 369
P +AG D+T YL+K++ RGY+F TA+ E VR +KEKL
Sbjct: 162 GVTHICPVYEGFALPHLTRRLDIAGRDITKYLIKLMLLRGYAFNHTADFETVRMMKEKLC 221
Query: 370 YVALDFEQEMXTA 408
YV + EQE A
Sbjct: 222 YVGYNIEQEQKLA 234
Score = 35.1 bits (77), Expect = 0.047
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +3
Query: 423 LEKSYELPDGQVITXGNXRFRCXEVLFQPCSWVWKLAGFHXTTYXSIXKCDVD 581
L + Y LPDG+V+ RF E LFQP + G + +I D+D
Sbjct: 240 LVEQYTLPDGRVVKLSGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADID 292
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 95.1 bits (226), Expect = 4e-20
Identities = 48/116 (41%), Positives = 69/116 (59%)
Frame = +1
Query: 16 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASXXXXXXXXXXXXXC 195
+HPVLLTEAPLNP+ NREK ++ FETFN PA+++++QAVLSLYA+
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDAGDGV 185
Query: 196 LPHRAHLRRIRTPPRHPASGLAGXDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 363
P + +AG D++ YL +L + G+ F +++E EIVR IKE+
Sbjct: 186 SHSVPIYEGFAMPHSIMRTDIAGRDVSRYLRLLLRKEGHCFHSSSELEIVRTIKEE 241
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 71.7 bits (168), Expect = 4e-13
Identities = 32/54 (59%), Positives = 36/54 (66%)
Frame = +3
Query: 423 LEKSYELPDGQVITXGNXRFRCXEVLFQPCSWVWKLAGFHXTTYXSIXKCDVDI 584
LEK+YELPDGQVI+ GN RFRC E +FQP + G H Y I KCDVDI
Sbjct: 10 LEKTYELPDGQVISIGNERFRCPEAMFQPAFLGMEAPGIHEAIYNCIMKCDVDI 63
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 50.0 bits (114), Expect = 2e-06
Identities = 19/45 (42%), Positives = 33/45 (73%)
Frame = +1
Query: 19 HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS 153
HP+L++EA N + REK+T++MFE +N PA ++ +VL+ +A+
Sbjct: 34 HPLLMSEAAWNTRIKREKLTELMFEKYNVPAFFLCKNSVLTAFAN 78
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 176 LDSGDGVSHTVPIYEGYALPHAILR 250
+DSG + VP+++GY L AI+R
Sbjct: 86 IDSGATQTSAVPVHDGYVLQQAIVR 110
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/49 (38%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Frame = +1
Query: 256 LAGXDLTDYLMKILTE-RGYSFTTTAEREIVRDIKEKLWYVALDFEQEM 399
+ G LT+ L + L + RG++FT+++ +IV DIKEK+ Y++ D +E+
Sbjct: 810 IGGHHLTENLKQYLRDQRGHNFTSSSGWQIVNDIKEKICYLSKDHLKEV 858
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 423 LEKSYELPDGQVITXGNXRFRCXEVLFQP 509
L K Y LPDGQ+I+ G E LF+P
Sbjct: 867 LTKFYTLPDGQMISIGYECISSMEPLFRP 895
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 34.3 bits (75), Expect = 0.082
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +2
Query: 176 LDSGDGVSHTVPIYEGYALPHAI 244
+DSGDGV+H +P+ EGY + I
Sbjct: 66 IDSGDGVTHVIPVAEGYVIGSCI 88
Score = 34.3 bits (75), Expect = 0.082
Identities = 16/68 (23%), Positives = 33/68 (48%)
Frame = +1
Query: 256 LAGXDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLWYVALDFEQEMXTAYPAAPSRSL 435
+AG D+T ++ ++L ER E + IKE+ Y+ D +E Y P++ +
Sbjct: 93 IAGRDITFFVQQLLREREMGIPPEQSMETAKTIKERWGYICPDIAKEF-AKYEQEPAKWI 151
Query: 436 TNFPTVRS 459
+ ++ +
Sbjct: 152 KKYESINA 159
>SB_51831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1065
Score = 31.5 bits (68), Expect = 0.58
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +3
Query: 177 WTPATVSPTPCPSTKDTHSP-TPSCVW--LSRXRPHRLPHEDPHRARLLVHYHRRAGNRS 347
W P PT P+ K T +P TPS V + +PHR HE+ R +H R GN
Sbjct: 918 WAPKIPLPTEPPTEKMTEAPTTPSAVHGEEDKNKPHR-KHEERER------HHGRHGNSK 970
Query: 348 *HQ 356
H+
Sbjct: 971 KHR 973
>SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06)
Length = 2009
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Frame = +3
Query: 102 HARXVRRHPSRALAVRVRSYHR-YXCWTPATVSPTPCPSTKDTHSPTPSCVWLSRXRPHR 278
HA + PSRA + + R Y A P P T T C++L R R
Sbjct: 821 HALHLPHTPSRATSSPYATACRIYPIRHRALHLPHTPPCASSTSYATTRCIYLIRHRVPH 880
Query: 279 LPHEDPHRA 305
LPH P A
Sbjct: 881 LPHTPPRSA 889
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +3
Query: 201 TPCPSTKDTHSPTPSCVWLSRXRPHRLPHEDPH 299
TP P T T C++L R R LPH PH
Sbjct: 912 TP-PRAASTPYATARCIYLIRHRTLHLPHTPPH 943
>SB_43791| Best HMM Match : Hep_59 (HMM E-Value=0.54)
Length = 214
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -2
Query: 393 LLEVKSDVPQLLLDVTNDFPLGGGSERVAALGEDLHEVVCEVAT 262
+LEV + P+ L D+ ND+PL G V+ + L E ++AT
Sbjct: 35 ILEVDLEYPKSLYDLHNDYPLAAGKVNVSK--DMLSEYCDKIAT 76
>SB_36117| Best HMM Match : Rubredoxin (HMM E-Value=1.8)
Length = 996
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +3
Query: 216 TKDTHSPTPSCVWLSRXRPHRLPHED--PHRARLLVHYHRRA 335
TK+ PT W SR P PH + P+ L HY+ A
Sbjct: 407 TKNGTKPTTPYPWFSRITPKYFPHSNIQPYNQYLAGHYYAAA 448
>SB_49291| Best HMM Match : Herpes_UL69 (HMM E-Value=4.5)
Length = 491
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = -1
Query: 244 DGVGECVSFVDGHGVGDTVAGVQHXYRWYDRTRTARAR 131
DGVG CV DG G D ++H YDR R +R+R
Sbjct: 215 DGVGGCVDNDDGGGAAD--LQLRHPDP-YDRVRLSRSR 249
>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3176
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Frame = +3
Query: 3 HEPRGTPSPAH*GSPQPQGQQRED---DPDHVRNIQHARXVRRHPSR 134
HEPR H G PQ +QR D DP + +R R SR
Sbjct: 1505 HEPRAGIELLHDGHRPPQSEQRADSRVDPRRIHGFPDSRSSRPGDSR 1551
>SB_40649| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 240
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +3
Query: 192 VSPTPCPSTKDTHSPTPSCVWLSRXRPHRLPHED--PHRARLL-VHYHRRAGN 341
V+ TP P+T+ + P PSC+ + + + PHE P RAR Y GN
Sbjct: 177 VAETP-PTTQANNDPVPSCMPDASSQAPQPPHEPRRPTRARTRPKRYEPETGN 228
>SB_56505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 959
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 195 SPTPCPSTKDTHSPTPSCVWLSRX--RPHRLPHEDPHRA 305
+P+P P ++SP P+C + + +PH +P HR+
Sbjct: 134 TPSPLPRPHMSYSPRPTCNTIPKGANQPHPIPLPPIHRS 172
>SB_18956| Best HMM Match : SCAN (HMM E-Value=3.6)
Length = 337
Score = 27.5 bits (58), Expect = 9.4
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Frame = +3
Query: 39 GSPQPQGQQREDDPDHVRNIQHARXVRRHPSRALAVRVRSYH----RYXCWTPATVSPTP 206
GS +G+QR ++PD V + A + VR Y+ R C A SP
Sbjct: 87 GSEYHRGKQRRENPDIVTDRNWADLLEVARDHPRVVRYSRYNLQSWRANCELCAIFSPPD 146
Query: 207 CPSTKD 224
PST D
Sbjct: 147 NPSTDD 152
>SB_10144| Best HMM Match : Extensin_2 (HMM E-Value=0.79)
Length = 701
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -2
Query: 393 LLEVKSDVPQLLLDVTNDFPLGGGSERVAALGEDLHEVVCEVAT 262
+LEV D P+ L D+ ND+PL ERV + L E ++T
Sbjct: 482 ILEVDLDYPKHLHDLHNDYPL--AVERVNVSKDMLSEYCNRIST 523
>SB_23172| Best HMM Match : DNA_RNApol_7kD (HMM E-Value=5.3)
Length = 189
Score = 27.5 bits (58), Expect = 9.4
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Frame = +3
Query: 39 GSPQPQGQQREDDPDHVRNIQHARXVRRHPSRALAVRVRSYH----RYXCWTPATVSPTP 206
GS +G+QR ++PD V + A + VR Y+ R C A SP
Sbjct: 87 GSEYHRGKQRRENPDIVTDRNWADLLEVARDHPRVVRYSRYNLQSWRANCELCAIFSPPD 146
Query: 207 CPSTKD 224
PST D
Sbjct: 147 NPSTDD 152
>SB_15491| Best HMM Match : zf-C3HC4 (HMM E-Value=0.079)
Length = 689
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +3
Query: 183 PATVSPTPCPSTKDTHSPTPSCVWLSRXRPHRLPHE 290
P+ PT C T TPS + + R H L HE
Sbjct: 381 PSLPGPTTCRGESGTGKATPSTMSTNAHRHHPLGHE 416
>SB_3866| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1178
Score = 27.5 bits (58), Expect = 9.4
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Frame = +3
Query: 39 GSPQPQGQQREDDPDHVRNIQHARXVRRHPSRALAVRVRSYH----RYXCWTPATVSPTP 206
GS +G+QR ++PD V + A + VR Y+ R C A SP
Sbjct: 125 GSEYHRGKQRRENPDIVTDRNWADLLEVARDHPRVVRYSRYNLQSWRANCELCAIFSPPD 184
Query: 207 CPSTKD 224
PST D
Sbjct: 185 NPSTDD 190
>SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41)
Length = 1069
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = +1
Query: 358 EKLWYVALDFEQEMXTAYPAAPSRSLTNFPTVRSSLSETXDSVA 489
+K W A+D Q T Y SLT TV LS VA
Sbjct: 506 KKFWVKAVDLSQSPVTLYKNQKVGSLTTVDTVSEPLSSKETLVA 549
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,573,460
Number of Sequences: 59808
Number of extensions: 371125
Number of successful extensions: 1698
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1682
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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