Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060609.seq
(684 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 118 1e-27
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 62 5e-11
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 48 1e-06
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 38 0.001
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 38 0.001
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 36 0.007
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 35 0.013
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 35 0.013
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 34 0.022
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 34 0.022
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 33 0.029
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 33 0.038
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 33 0.051
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 32 0.067
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 32 0.067
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 31 0.16
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 31 0.20
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 31 0.20
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 30 0.36
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 29 0.63
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 29 0.63
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 29 0.83
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 28 1.4
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 28 1.4
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 27 3.3
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 25 7.7
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 25 7.7
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 25 7.7
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 7.7
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 118 bits (283), Expect = 1e-27
Identities = 60/131 (45%), Positives = 78/131 (59%), Gaps = 1/131 (0%)
Frame = +1
Query: 256 WDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYV 435
W + +L PF K+FY H V RS EV EYR E+ V G+ V P+ FEEA FP+YV
Sbjct: 74 WKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYV 133
Query: 436 QQGVKTMGYKEPTPIQAQGWPIAMLERI*LA*FKRVPAKRWPTSCQP-LWHINNQPPIRR 612
+ VK +G++ PTPIQ Q WP+AM R + + + + C P + HIN QP +
Sbjct: 134 LKEVKQLGFEAPTPIQQQAWPMAMSGRD-MVGISATGSGKTLSYCLPAIVHINAQPLLSP 192
Query: 613 GDGPIALVLAP 645
GDGPI LVLAP
Sbjct: 193 GDGPIVLVLAP 203
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 62.5 bits (145), Expect = 5e-11
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 1/128 (0%)
Frame = +1
Query: 265 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQ 441
++ + F K+FY + SP EV+E R + + + + G++ P+ + +
Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS 431
Query: 442 GVKTMGYKEPTPIQAQGWPIAMLERI*LA*FKRVPAKRWPTSCQPLWHINNQPPIRRGDG 621
+ ++GY++PT IQAQ P R + K K HI +Q P++ G+G
Sbjct: 432 VINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEG 491
Query: 622 PIALVLAP 645
PIA+++ P
Sbjct: 492 PIAIIMTP 499
Score = 35.1 bits (77), Expect = 0.010
Identities = 12/21 (57%), Positives = 20/21 (95%)
Frame = +3
Query: 510 GKNLVGVVQTGSGKTLAYILP 572
G++++GV +TGSGKT+A++LP
Sbjct: 455 GRDVIGVAKTGSGKTIAFLLP 475
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 48.0 bits (109), Expect = 1e-06
Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Frame = +1
Query: 349 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LA 528
+ ++ +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ +L+R L
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPV-LLQRKDLI 290
Query: 529 *FKRVPAKRWPTSCQPL-WHINNQPPIRRGD---GPIALVLAP 645
+ + PL I+ PP+ + GP A+VLAP
Sbjct: 291 GIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAP 333
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 38.3 bits (85), Expect = 0.001
Identities = 20/46 (43%), Positives = 30/46 (65%)
Frame = +3
Query: 510 GKNLVGVVQTGSGKTLAYILPAIVAHKQPTAYSER*WSDCFGLGAL 647
G++++G +TGSGKTLA+I+P I Y ++ W+ GLGAL
Sbjct: 76 GRDILGAAKTGSGKTLAFIVPLI-----ENLYRKK-WTSLDGLGAL 115
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 37.9 bits (84), Expect = 0.001
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +1
Query: 394 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
PI F+E + +++G+K YKEPTPIQA WP + R
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGR 203
Score = 34.3 bits (75), Expect = 0.017
Identities = 12/23 (52%), Positives = 21/23 (91%)
Frame = +3
Query: 510 GKNLVGVVQTGSGKTLAYILPAI 578
G+++VG+ +TGSGKT+A+ +PA+
Sbjct: 202 GRDVVGIAETGSGKTVAFGIPAL 224
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 35.5 bits (78), Expect = 0.007
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 447 KDNGLQRTDAYSSSRLADSYVGKNLVGVVQTGSGKTLAYILPAI 578
K+ G + + G++++G +TGSGKTLA+++P I
Sbjct: 105 KEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTI 148
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 34.7 bits (76), Expect = 0.013
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 364 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 501
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPI 202
Score = 28.7 bits (61), Expect = 0.83
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 510 GKNLVGVVQTGSGKTLAYILPAI 578
G++L+ QTGSGKT ++ P +
Sbjct: 206 GRDLMACAQTGSGKTAGFLFPIL 228
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 34.7 bits (76), Expect = 0.013
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +3
Query: 510 GKNLVGVVQTGSGKTLAYILPAIVAHKQPTAYS 608
G+++VG+ +TGSGKT A+++P I K A S
Sbjct: 106 GRDVVGMARTGSGKTAAFVIPMIEHLKSTLANS 138
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 33.9 bits (74), Expect = 0.022
Identities = 12/28 (42%), Positives = 22/28 (78%)
Frame = +3
Query: 516 NLVGVVQTGSGKTLAYILPAIVAHKQPT 599
NL+ V+ TG GK+L++++PA++ K+ T
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQT 1235
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 33.9 bits (74), Expect = 0.022
Identities = 12/28 (42%), Positives = 22/28 (78%)
Frame = +3
Query: 516 NLVGVVQTGSGKTLAYILPAIVAHKQPT 599
NL+ V+ TG GK+L++++PA++ K+ T
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQT 1235
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 33.5 bits (73), Expect = 0.029
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +3
Query: 507 VGKNLVGVVQTGSGKTLAYILPAI 578
+GK++VG TGSGKT A+I+P +
Sbjct: 295 LGKDIVGAAVTGSGKTAAFIVPIL 318
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 33.1 bits (72), Expect = 0.038
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +3
Query: 510 GKNLVGVVQTGSGKTLAYILPAI 578
GK+LV +TGSGKT AY++P +
Sbjct: 51 GKDLVAQARTGSGKTAAYLIPIL 73
Score = 25.4 bits (53), Expect = 7.7
Identities = 9/44 (20%), Positives = 24/44 (54%)
Frame = +1
Query: 376 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 507
G+ + + F + N +Q+ + +++PT +Q++ P+A+
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLAL 49
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 32.7 bits (71), Expect = 0.051
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 492 LADSYVGKNLVGVVQTGSGKTLAYILPAI 578
+A G+N +G +TGSGKT A+ LP I
Sbjct: 38 IAQILEGRNCIGGAKTGSGKTAAFALPII 66
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 32.3 bits (70), Expect = 0.067
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = +3
Query: 513 KNLVGVVQTGSGKTLAYILPAI 578
++++G+ QTGSGKT A+ LP I
Sbjct: 84 RDVIGLAQTGSGKTAAFALPVI 105
Score = 30.7 bits (66), Expect = 0.20
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
F+E D + + + +G+K PTPIQ + P+ + +R
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKR 84
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 32.3 bits (70), Expect = 0.067
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +1
Query: 340 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 489
+E N E+T S E N + FEE N + + +G+ GY+ P+ +Q++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSR 50
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 31.1 bits (67), Expect = 0.16
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +3
Query: 456 GLQRTDAYSSSRLADSYVGKNLVGVVQTGSGKTLAYILPAI 578
G + S + ++ +G +++G TGSGKTLA+ +P +
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPIL 181
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 30.7 bits (66), Expect = 0.20
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +3
Query: 513 KNLVGVVQTGSGKTLAYILP 572
K+LV TGSGKTLAY+LP
Sbjct: 39 KDLVVEAVTGSGKTLAYLLP 58
Score = 28.7 bits (61), Expect = 0.83
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 501
F+ N +++ V G+K+ TP+QA P+
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPL 34
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 30.7 bits (66), Expect = 0.20
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +3
Query: 534 QTGSGKTLAYILPAI 578
QTGSGKTLAY+LP +
Sbjct: 186 QTGSGKTLAYLLPIV 200
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 29.9 bits (64), Expect = 0.36
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 534 QTGSGKTLAYILPAIVAH-KQPTAYSER*WSDCFGLGALPESLAQP 668
+T GK Y PA K+ ++SE + CF P++LA+P
Sbjct: 219 KTSRGKDQLYFSPAFQGSMKEILSFSEEETAQCFSYSPFPKNLAEP 264
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 29.1 bits (62), Expect = 0.63
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +3
Query: 468 TDAYSSSRLADSYVG--KNLVGVVQTGSGKTLAYILPAI 578
T+ + R A +G ++L+ TGSGKT+AY+ P +
Sbjct: 67 TECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPIL 105
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 29.1 bits (62), Expect = 0.63
Identities = 9/37 (24%), Positives = 23/37 (62%)
Frame = +3
Query: 159 RLDLATVAVDLEDLEDLVGKKNSLEVRTCVAQLGFCF 269
+ D++ + + + + +NS+++ +C+ Q+GFCF
Sbjct: 274 KFDISLIMALISAIINKTASQNSIKIISCLYQVGFCF 310
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 28.7 bits (61), Expect = 0.83
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 510 GKNLVGVVQTGSGKTLAYILPAIV 581
GK++ ++ TG GK+L Y LPA++
Sbjct: 534 GKDVFILMPTGGGKSLCYQLPAVI 557
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 27.9 bits (59), Expect = 1.4
Identities = 9/41 (21%), Positives = 23/41 (56%)
Frame = +3
Query: 456 GLQRTDAYSSSRLADSYVGKNLVGVVQTGSGKTLAYILPAI 578
G +R + + G++++ + G+GKT A+++P++
Sbjct: 63 GFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSL 103
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LA 528
FE+ + G+ G++ P+PIQ + PIA+ R LA
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILA 86
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 501 SYVGKNLVGVVQTGSGKTLAYILPAI 578
SY G V TGSGKTL+Y++P +
Sbjct: 171 SYGGDVCVSAA-TGSGKTLSYVIPIV 195
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 251 PVGILFHSNLSTKTFMIHILQFSKDHHMKSKSTEIIT 361
PV + +STK H+L S D H+ ++ E++T
Sbjct: 331 PVSQYAYRAISTKALR-HVLNLSYDFHLNKRAGEVLT 366
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 513 KNLVGVVQTGSGKTLAYILPA 575
+N V +TG+GKTLA++L A
Sbjct: 77 ENAVVQAKTGTGKTLAFLLVA 97
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 7.7
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +1
Query: 259 DSVSLQPFNKN----FYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQ 402
D V L PF K FYDP P LK + +E+ + + V +H P+Q
Sbjct: 112 DVVEL-PFTKGGYGGFYDPRPGCLKFTTHEINVSYTDTSIPV----IHIPVQ 158
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 25.4 bits (53), Expect = 7.7
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +3
Query: 513 KNLVGVVQTGSGKTLAYIL 569
+N++G Q+G+GKT A+ L
Sbjct: 154 RNMIGQSQSGTGKTAAFAL 172
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -3
Query: 457 PLSLHLVAHNQENL--LLQSIE 398
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,587,503
Number of Sequences: 5004
Number of extensions: 51976
Number of successful extensions: 160
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -