Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060609.seq
(684 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 89 4e-18
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 61 9e-10
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 55 5e-08
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 8e-08
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 52 6e-07
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 51 8e-07
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 47 1e-05
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 38 0.006
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 38 0.008
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.010
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.040
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 33 0.16
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 33 0.22
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.50
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 31 0.87
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24) 31 1.1
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 31 1.1
SB_51385| Best HMM Match : DEAD (HMM E-Value=0.00031) 30 1.5
SB_34740| Best HMM Match : DEAD (HMM E-Value=0.00031) 30 1.5
SB_22560| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0) 30 2.0
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 29 2.7
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 29 3.5
SB_29752| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 28 6.1
SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_19645| Best HMM Match : Smr (HMM E-Value=8.2) 28 8.1
SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07) 28 8.1
SB_58343| Best HMM Match : ELM2 (HMM E-Value=1.4e-16) 28 8.1
SB_27871| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 88.6 bits (210), Expect = 4e-18
Identities = 45/132 (34%), Positives = 66/132 (50%)
Frame = +1
Query: 250 PSWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 429
P + +PFNKNFY+ HP + K+S E+++ R + VSG P F F +
Sbjct: 467 PEKSKIDYKPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDE 526
Query: 430 YVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LA*FKRVPAKRWPTSCQPLWHINNQPPIR 609
+ ++ + Y +PT IQ Q PIA+ R + K K L HI +QP ++
Sbjct: 527 QMMASIRKLEYTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAAFLWPALVHIMDQPELQ 586
Query: 610 RGDGPIALVLAP 645
GDGPI L+ AP
Sbjct: 587 VGDGPIVLICAP 598
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 60.9 bits (141), Expect = 9e-10
Identities = 27/56 (48%), Positives = 37/56 (66%)
Frame = +1
Query: 322 RSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 489
R +EV+ YR + ++TV+G V P+ FEE+ FPDY+Q K G+ EPT IQAQ
Sbjct: 57 RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ 112
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 55.2 bits (127), Expect = 5e-08
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Frame = +1
Query: 346 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*L 525
+R + ++ G + PI+ ++EA PD + + V +GYK+PTPIQ Q PI + R +
Sbjct: 83 FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNRDII 142
Query: 526 A*FKRVPAKRWPTSCQPLWHINNQPPIRRGD----GPIALVLAP 645
+ K + L I P I R + GP AL+LAP
Sbjct: 143 GVAETGSGKTAAFAIPLLVWIMGLPKIERDNDADQGPYALILAP 186
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 54.4 bits (125), Expect = 8e-08
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Frame = +1
Query: 262 SVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQ 438
+V QPF K+FY P + K +P E +E+R + E + V G P++ + + +
Sbjct: 58 TVVYQPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWAQTGVQLKIL 117
Query: 439 QGVKTMGYKEPTPIQAQGWPIAMLER 516
+K Y++PTPIQAQ P+ M R
Sbjct: 118 DVLKKNSYEKPTPIQAQAIPVIMSGR 143
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 51.6 bits (118), Expect = 6e-07
Identities = 32/122 (26%), Positives = 53/122 (43%)
Frame = +1
Query: 280 FNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 459
F ++YD + V + S V+E R + + + G + PI+ F + N P + +
Sbjct: 32 FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91
Query: 460 YKEPTPIQAQGWPIAMLERI*LA*FKRVPAKRWPTSCQPLWHINNQPPIRRGDGPIALVL 639
++ PTPIQ Q M R + + K S + + P GD P+AL+L
Sbjct: 92 FQVPTPIQMQSLSCVMSGRDIIGLAETGSGKTLAYSLPLCMLLRTKAPSNPGDTPVALIL 151
Query: 640 AP 645
P
Sbjct: 152 TP 153
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 51.2 bits (117), Expect = 8e-07
Identities = 23/74 (31%), Positives = 39/74 (52%)
Frame = +1
Query: 295 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 474
Y HPT+ + +V++ R+ E+ V G V +P+ F +F + + + + GY PT
Sbjct: 161 YKEHPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPT 220
Query: 475 PIQAQGWPIAMLER 516
PIQ Q P+ + R
Sbjct: 221 PIQMQVLPVLLSGR 234
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = +1
Query: 334 EVEEYRNNHEVTVSGVEVHNPIQYF----EEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 501
++ +R+ + V G +V +P++ F E FPDY+ V+ GY PTPIQ Q P+
Sbjct: 137 KINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATPL 196
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 38.3 bits (85), Expect = 0.006
Identities = 21/52 (40%), Positives = 26/52 (50%)
Frame = +1
Query: 361 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
EV VSG I FEEAN + V+ YK+PTP+Q PI + R
Sbjct: 698 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGR 749
Score = 31.1 bits (67), Expect = 0.87
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +3
Query: 510 GKNLVGVVQTGSGKTLAYILPAIVA 584
G++++ QTGSGKT A++LP + +
Sbjct: 748 GRDVMACAQTGSGKTAAFLLPVMTS 772
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 38.3 bits (85), Expect = 0.006
Identities = 21/52 (40%), Positives = 26/52 (50%)
Frame = +1
Query: 361 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
EV VSG I FEEAN + V+ YK+PTP+Q PI + R
Sbjct: 121 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGR 172
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 37.9 bits (84), Expect = 0.008
Identities = 19/46 (41%), Positives = 31/46 (67%)
Frame = +3
Query: 510 GKNLVGVVQTGSGKTLAYILPAIVAHKQPTAYSER*WSDCFGLGAL 647
G++++G +TGSGKTLA+++P I T + ++ W+ GLGAL
Sbjct: 87 GRDVLGAAKTGSGKTLAFLIPII-----ETLWRQK-WTSMDGLGAL 126
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +3
Query: 447 KDNGLQRTDAYSSSRLADSYVGKNLVGVVQTGSGKTLAYILPAI 578
KD G +A G++L+G +TGSGKTLA+++P +
Sbjct: 588 KDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVPVV 631
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 35.5 bits (78), Expect = 0.040
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 456 GLQRTDAYSSSRLADSYVGKNLVGVVQTGSGKTLAYILPAIVA 584
G +R + L G++L+ QTGSGKT AY+LP + +
Sbjct: 498 GYRRPTPVQKAALPIVMAGRDLMACAQTGSGKTAAYMLPVLTS 540
Score = 34.7 bits (76), Expect = 0.071
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +1
Query: 370 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
VSG I F E F + + + GY+ PTP+Q PI M R
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGR 517
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +3
Query: 510 GKNLVGVVQTGSGKTLAYILPAIVAHKQPTAYSE 611
G+++ GV GSGK LAY+LP I + + Y E
Sbjct: 224 GRDVAGVAIEGSGKRLAYLLPIIHQITESSVYQE 257
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 33.1 bits (72), Expect = 0.22
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +3
Query: 447 KDNGLQRTDAYSSSRLADSYVGKNLVGVVQTGSGKTLAYILPAI 578
+D G+ +S Y G++++G +TG+GKTL++ LP +
Sbjct: 89 EDRGITYLFPIQASTFNYIYDGEDVIGQARTGTGKTLSFALPLV 132
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 31.9 bits (69), Expect = 0.50
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +3
Query: 513 KNLVGVVQTGSGKTLAYILPAIVAHKQPTAYSER 614
++++G +TGSGKTLA+ +P I+ H + AY +R
Sbjct: 169 RDIIGAAETGSGKTLAFGIP-IIQHIE--AYKKR 199
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 31.1 bits (67), Expect = 0.87
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +3
Query: 438 TRCKDNGLQRTDAYSSSRLADSYVGKNLVGVVQTGSGKTLAYILPAI 578
++C G+++ + + G++ +G +TGSGKT A+ LP +
Sbjct: 20 SQCVAMGIKKPTEIQLNCVPPILQGRDCIGCAKTGSGKTAAFALPIL 66
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 31.1 bits (67), Expect = 0.87
Identities = 11/21 (52%), Positives = 18/21 (85%)
Frame = +3
Query: 510 GKNLVGVVQTGSGKTLAYILP 572
GK++V + +TGSGKT A+++P
Sbjct: 318 GKDVVAMARTGSGKTAAFLIP 338
>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +1
Query: 382 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW 495
++H P++ + FP Y + Y P P QA W
Sbjct: 6 DIHGPVRKLHKHGFPGYEEDYAAVFKYPTPWPEQAMEW 43
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 397 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
I FE+ + + + V GYK+PTP+Q PI +R
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKR 913
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +3
Query: 513 KNLVGVVQTGSGKTLAYILPAI 578
++L+ QTGSGKT A+++P +
Sbjct: 913 RDLMACAQTGSGKTAAFLIPIL 934
>SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)
Length = 1366
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +3
Query: 510 GKNLVGVVQTGSGKTLAYILPAIVAHKQ 593
G + + V+ TG+GK+L Y LPA + HK+
Sbjct: 539 GMSSLVVLSTGAGKSLCYQLPAYMYHKR 566
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +3
Query: 513 KNLVGVVQTGSGKTLAYILPAIVA 584
K+++G+ +TGSGKT A+ LP + A
Sbjct: 2 KDVIGLAETGSGKTGAFALPILQA 25
>SB_51385| Best HMM Match : DEAD (HMM E-Value=0.00031)
Length = 127
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/35 (42%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = +3
Query: 492 LADSYVGKNLVGVVQTGSGKTLAY-ILPAIVAHKQ 593
L Y+ K+++ V+ TG GK+L + +LPA++ HKQ
Sbjct: 10 LESLYLNKDVLAVLPTGYGKSLVFHLLPALL-HKQ 43
>SB_34740| Best HMM Match : DEAD (HMM E-Value=0.00031)
Length = 233
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/35 (42%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = +3
Query: 492 LADSYVGKNLVGVVQTGSGKTLAY-ILPAIVAHKQ 593
L Y+ K+++ V+ TG GK+L + +LPA++ HKQ
Sbjct: 116 LESLYLNKDVLAVLPTGYGKSLVFHLLPALL-HKQ 149
>SB_22560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 308
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = +3
Query: 501 SYVGKNLVGVVQTGSGKTLAY-ILPAIVAHKQ 593
SY G++ +GV+ TG GK++ + ILPA+ K+
Sbjct: 192 SYTGRDGIGVLPTGYGKSVIFHILPAMYDFKR 223
>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
Length = 675
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 292 FYDPHPTVLKRSPYEVEEYRNN--HEVTVSGVEVHNPIQYFEEANFPDY 432
+ D VL E EE NN H++ + + +HNP YFE+ + DY
Sbjct: 217 YRDEDDGVLVPIEQEAEEEVNNKLHKILIVNM-IHNPFNYFEKKSPTDY 264
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 516 NLVGVVQTGSGKTLAYILPAI 578
+++ QTGSGKTLAY+ P +
Sbjct: 417 HVICAAQTGSGKTLAYLAPLV 437
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +1
Query: 358 HEVTVSGVEVHNPI---QYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLE 513
HEV V + +P+ + FEE +++GV MG+ +P+ IQ P+ + +
Sbjct: 86 HEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLAD 140
>SB_29752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1281
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +3
Query: 537 TGSGKTLAYILPAIVA 584
TGSGK+L Y LPA+VA
Sbjct: 43 TGSGKSLCYQLPAVVA 58
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +3
Query: 483 SSRLADSYVGKNLVGVVQTGSGKTLAYILPAI 578
+S + + +GK++ TG+GKT A++LP +
Sbjct: 38 ASTIPVALMGKDVCACAATGTGKTAAFMLPIL 69
>SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 728
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -2
Query: 242 CSDLQRILFSHQILQILQIYCHRC-QIETN 156
CS +L +IL+ +YC +C Q ETN
Sbjct: 14 CSLCSEVLTEPKILRCFHVYCQKCLQAETN 43
>SB_19645| Best HMM Match : Smr (HMM E-Value=8.2)
Length = 346
Score = 27.9 bits (59), Expect = 8.1
Identities = 31/97 (31%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Frame = +1
Query: 235 SEHASPSWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQ---- 402
SE AS S SLQ N N DP L R+ + R +VT ++ P Q
Sbjct: 239 SEGASLMKLSTSLQSLNTNIKDPRAAFLNRTKIKDLLVRTITKVTFLQQQIAQPRQLTLT 298
Query: 403 -YFEEANFPDYV----QQG--VKTMGYKEPTPIQAQG 492
YF E + DYV Q G + G P+P + G
Sbjct: 299 KYF-ETDSSDYVVELLQDGSAANSKGSDTPSPASSGG 334
>SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07)
Length = 401
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 173 CQIETNYRRICCLLQIWN-HRFHGYYSS 93
C + +YRR CC L +W H + Y+SS
Sbjct: 218 CCVRVDYRRKCC-LHVWRVHTTNTYWSS 244
>SB_58343| Best HMM Match : ELM2 (HMM E-Value=1.4e-16)
Length = 460
Score = 27.9 bits (59), Expect = 8.1
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = -2
Query: 326 DLLRTVGCGS*KFLLKGWSETESQLGD-ACSDLQRILFSHQILQILQIYCHRCQIETNYR 150
DL T+G + K LL+ + E ++GD D+ R SH+ + + + Y + I N
Sbjct: 41 DLSSTLGIQAEKHLLQAEEDAEVEMGDIELEDVSRHQLSHREVFLSRQYEN---INANTI 97
Query: 149 RICCLLQIWN 120
R CL+ ++N
Sbjct: 98 RGKCLVTLYN 107
>SB_27871| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 816
Score = 27.9 bits (59), Expect = 8.1
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = -2
Query: 326 DLLRTVGCGS*KFLLKGWSETESQLGD-ACSDLQRILFSHQILQILQIYCHRCQIETNYR 150
DL T+G + K LL+ + E ++GD D+ R SH+ + + + Y + I N
Sbjct: 52 DLSSTLGIQAEKHLLQAEEDAEVEMGDIELEDVSRHQLSHREVFLSRQYEN---INANTI 108
Query: 149 RICCLLQIWN 120
R CL+ ++N
Sbjct: 109 RGKCLVTLYN 118
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,231,314
Number of Sequences: 59808
Number of extensions: 383890
Number of successful extensions: 1109
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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