Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060609.seq
(684 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 78 7e-15
Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical pr... 74 8e-14
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 66 2e-11
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 63 2e-10
AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical ... 44 1e-04
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 42 3e-04
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 42 3e-04
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 42 3e-04
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 41 0.001
AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical ... 40 0.001
AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical ... 36 0.027
AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical ... 36 0.036
Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical pr... 35 0.047
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 32 0.33
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 32 0.33
AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical ... 32 0.33
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 32 0.33
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 32 0.44
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 32 0.44
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 31 0.58
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 31 0.58
Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical p... 31 0.77
AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical ... 31 0.77
AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical ... 31 0.77
Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical pr... 30 1.3
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 30 1.3
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 30 1.3
U21317-6|AAA62527.1| 313|Caenorhabditis elegans Hypothetical pr... 30 1.3
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 30 1.3
AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical ... 30 1.8
AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical ... 30 1.8
U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical pr... 29 2.3
AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical... 29 2.3
AC024881-8|AAK71411.2| 318|Caenorhabditis elegans Serpentine re... 29 2.3
U64840-7|AAB04965.1| 340|Caenorhabditis elegans Hypothetical pr... 29 3.1
U53141-4|AAA96106.1| 528|Caenorhabditis elegans Mutator protein... 29 3.1
U80447-2|AAO38637.1| 579|Caenorhabditis elegans Hypothetical pr... 29 4.1
U00052-2|AAK95881.1| 404|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical pr... 28 5.4
U13019-12|AAC24448.1| 316|Caenorhabditis elegans Serpentine rec... 28 5.4
U00052-13|AAW88393.1| 608|Caenorhabditis elegans Hypothetical p... 28 5.4
U00052-12|AAK21428.2| 631|Caenorhabditis elegans Hypothetical p... 28 5.4
L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical pr... 28 5.4
AC006714-20|AAK29723.2| 281|Caenorhabditis elegans Serpentine r... 28 5.4
AC006714-16|AAK29721.3| 281|Caenorhabditis elegans Serpentine r... 28 5.4
Z75552-8|CAD54158.1| 939|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z75552-7|CAA99943.3| 944|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z75539-5|CAD54134.1| 939|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z75539-4|CAA99846.3| 944|Caenorhabditis elegans Hypothetical pr... 28 7.1
AF067945-16|AAC17675.1| 341|Caenorhabditis elegans Serpentine r... 28 7.1
Z81103-2|CAB03213.1| 403|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z81103-1|CAB03208.2| 457|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z73098-7|CAA97341.1| 1215|Caenorhabditis elegans Hypothetical pr... 27 9.4
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 77.8 bits (183), Expect = 7e-15
Identities = 43/130 (33%), Positives = 68/130 (52%)
Frame = +1
Query: 256 WDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYV 435
W + +L P K+FY + V +R YE++++ + ++VT+ G V P+ F EA P +
Sbjct: 82 WSAENLTPIEKDFYHENAAVSRREQYEIDQWVSANQVTLEGRGVPRPVFEFNEAPLPGQI 141
Query: 436 QQGVKTMGYKEPTPIQAQGWPIAMLERI*LA*FKRVPAKRWPTSCQPLWHINNQPPIRRG 615
+ + +++PT IQ+ WPIAM R ++ K K L HI Q +RG
Sbjct: 142 HE-LLYGKFQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHITKQAHRQRG 200
Query: 616 DGPIALVLAP 645
+GP LVL P
Sbjct: 201 EGPAVLVLLP 210
>Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical
protein C46F11.4 protein.
Length = 811
Score = 74.1 bits (174), Expect = 8e-14
Identities = 37/127 (29%), Positives = 64/127 (50%)
Frame = +1
Query: 265 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 444
+ Q FNKNFY+ H + + +V +N + V G++ P+ F +F + +
Sbjct: 220 IQYQKFNKNFYEEHEDIKRLHYMDVIRLQNTMNLRVGGLKPPRPVCSFAHFSFDKLLMEA 279
Query: 445 VKTMGYKEPTPIQAQGWPIAMLERI*LA*FKRVPAKRWPTSCQPLWHINNQPPIRRGDGP 624
++ Y++PTPIQA P A+ R L K K + HI +QP ++ G+GP
Sbjct: 280 IRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIVHIMDQPDLKAGEGP 339
Query: 625 IALVLAP 645
+A+++ P
Sbjct: 340 VAVIVVP 346
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 66.5 bits (155), Expect = 2e-11
Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 1/135 (0%)
Frame = +1
Query: 244 ASPSWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEAN 420
A V + F KNFY + + + EV+ YR + +TV G++ PI+ + +
Sbjct: 251 AQTDHSKVYYRKFKKNFYIETEEIRRMTKAEVKAYREELDSITVKGIDCPKPIKTWAQCG 310
Query: 421 FPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LA*FKRVPAKRWPTSCQPLWHINNQP 600
+ +K Y +PT IQAQ P M R + K K HI +QP
Sbjct: 311 VNLKMMNVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQP 370
Query: 601 PIRRGDGPIALVLAP 645
+ GDGPIA++LAP
Sbjct: 371 ELEEGDGPIAVILAP 385
Score = 35.5 bits (78), Expect = 0.036
Identities = 12/21 (57%), Positives = 20/21 (95%)
Frame = +3
Query: 510 GKNLVGVVQTGSGKTLAYILP 572
G++++G+ +TGSGKTLA++LP
Sbjct: 341 GRDVIGIAKTGSGKTLAFLLP 361
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 62.9 bits (146), Expect = 2e-10
Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 10/123 (8%)
Frame = +1
Query: 346 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*L 525
+R + +++ G V P++ +EEA FPD V Q VK +GY EPTPIQ Q PI + R +
Sbjct: 283 FREDFNISIKGGRVPRPLRNWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVI 342
Query: 526 A*FKRVPAKRWPTSCQPLWHINNQPPIRRGD----GPIALVLAPYQRV*H------NQFS 675
+ K L I + P + R + GP A+++AP + + N+F
Sbjct: 343 GVAETGSGKTAAFLLPLLVWITSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFG 402
Query: 676 KLL 684
KLL
Sbjct: 403 KLL 405
>AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical
protein Y23H5B.6 protein.
Length = 732
Score = 44.0 bits (99), Expect = 1e-04
Identities = 25/67 (37%), Positives = 35/67 (52%)
Frame = +3
Query: 447 KDNGLQRTDAYSSSRLADSYVGKNLVGVVQTGSGKTLAYILPAIVAHKQPTAYSER*WSD 626
KDN + +A S G ++VG +TGSGKTLA ++P + A + WS
Sbjct: 92 KDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVLEALWRAK------WSP 145
Query: 627 CFGLGAL 647
+GLGAL
Sbjct: 146 DYGLGAL 152
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/54 (38%), Positives = 27/54 (50%)
Frame = +1
Query: 355 NHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
N V VSG V I++F EA F V + V GY +PTP+Q P + R
Sbjct: 124 NIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANR 177
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 513 KNLVGVVQTGSGKTLAYILPAI 578
++L+ QTGSGKT A++LP I
Sbjct: 177 RDLMSCAQTGSGKTAAFLLPII 198
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/54 (38%), Positives = 27/54 (50%)
Frame = +1
Query: 355 NHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
N V VSG V I++F EA F V + V GY +PTP+Q P + R
Sbjct: 108 NIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANR 161
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 513 KNLVGVVQTGSGKTLAYILPAI 578
++L+ QTGSGKT A++LP I
Sbjct: 161 RDLMSCAQTGSGKTAAFLLPII 182
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/54 (38%), Positives = 27/54 (50%)
Frame = +1
Query: 355 NHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
N V VSG V I++F EA F V + V GY +PTP+Q P + R
Sbjct: 105 NIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANR 158
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 513 KNLVGVVQTGSGKTLAYILPAI 578
++L+ QTGSGKT A++LP I
Sbjct: 158 RDLMSCAQTGSGKTAAFLLPII 179
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +1
Query: 364 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 498
V +G +V PI F + + +++++ +KT GY PTP+Q P
Sbjct: 154 VEATGDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIP 198
Score = 31.5 bits (68), Expect = 0.58
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +3
Query: 510 GKNLVGVVQTGSGKTLAYILPAIVA 584
G++L+ QTGSGKT A+++P + A
Sbjct: 203 GRDLMSCAQTGSGKTAAFLVPLVNA 227
>AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical
protein Y54G11A.3 protein.
Length = 504
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/45 (40%), Positives = 28/45 (62%)
Frame = +3
Query: 447 KDNGLQRTDAYSSSRLADSYVGKNLVGVVQTGSGKTLAYILPAIV 581
+ NG ++ S G++ +GV QTGSGKTLA++LPA++
Sbjct: 100 RKNGFEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAFLLPALL 144
Score = 34.3 bits (75), Expect = 0.082
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Frame = +1
Query: 271 LQPFNKNFYDPHPTVLKRSPYEVEE-YRNNHEVTV------SGVEVHNPIQYFEEANFPD 429
++P ++ Y SP +++E Y N + V S V++ P+ FE+A +
Sbjct: 33 MKPIVRDLYKIPNEQKNLSPEQLQELYTNGGVMKVYPFREESTVKIPPPVNSFEQAFGSN 92
Query: 430 YVQQG-VKTMGYKEPTPIQAQGWPIAM 507
G ++ G+++P+PIQ+Q WP+ +
Sbjct: 93 ASIMGEIRKNGFEKPSPIQSQMWPLLL 119
>AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical
protein H27M09.1 protein.
Length = 630
Score = 35.9 bits (79), Expect = 0.027
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +3
Query: 447 KDNGLQRTDAYSSSRLADSYVGKNLVGVVQTGSGKTLAYILPAIV 581
K G+ A + + G++++G+ TGSGKT+ ++LP ++
Sbjct: 206 KQKGIVTPTAIQIQGIPVALSGRDMIGIASTGSGKTMTFVLPLVM 250
>AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical
protein B0511.6 protein.
Length = 544
Score = 35.5 bits (78), Expect = 0.036
Identities = 16/28 (57%), Positives = 23/28 (82%), Gaps = 1/28 (3%)
Frame = +3
Query: 510 GKNLVGVVQTGSGKTLAYILPAI-VAHK 590
GK+++ +TGSGKTLA++LPAI + HK
Sbjct: 105 GKDVLASAKTGSGKTLAFLLPAIELLHK 132
>Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical
protein T26G10.1 protein.
Length = 489
Score = 35.1 bits (77), Expect = 0.047
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +3
Query: 444 CKDNGLQRTDAYSSSRLADSYVGKNLVGVVQTGSGKTLAYILPAI 578
C+ G + + L + GK+++G+ +TGSGKT A+ +P +
Sbjct: 59 CQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVL 103
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 32.3 bits (70), Expect = 0.33
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 394 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 501
P + F EAN + +Q+ V GY + TPIQ P+
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPL 374
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 456 GLQRTDAYSSSRLADSYVGKNLVGVVQTGSGKTLAYILP 572
G +T L + G +++ QTGSGKT A++LP
Sbjct: 360 GYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLP 398
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = +3
Query: 471 DAYSSSRLADSYVGKNLVGVVQTGSGKTLAYIL-----PAIVAH 587
D+Y++ + A+ Y K +V V Q TLA IL PAI H
Sbjct: 594 DSYTTEKSAEVYTKKTMVFVSQRAMADTLASILSSAQVPAITIH 637
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 32.3 bits (70), Expect = 0.33
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 394 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 501
P + F EAN + +Q+ V GY + TPIQ P+
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPL 374
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 456 GLQRTDAYSSSRLADSYVGKNLVGVVQTGSGKTLAYILP 572
G +T L + G +++ QTGSGKT A++LP
Sbjct: 360 GYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLP 398
>AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical
protein C24H12.4a protein.
Length = 634
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = +3
Query: 456 GLQRTDAYSSSRLADSYVGKNLVGVVQTGSGKTLAYILPAI 578
G ++ + S ++ + KN++G +TGSGKT A+++P +
Sbjct: 108 GWEKANQVQESVISLALENKNIMGRARTGSGKTGAFLIPLV 148
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 32.3 bits (70), Expect = 0.33
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 394 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 501
P + F EAN + +Q+ V GY + TPIQ P+
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPL 374
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 456 GLQRTDAYSSSRLADSYVGKNLVGVVQTGSGKTLAYILP 572
G +T L + G +++ QTGSGKT A++LP
Sbjct: 360 GYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLP 398
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = +3
Query: 471 DAYSSSRLADSYVGKNLVGVVQTGSGKTLAYIL-----PAIVAH 587
D+Y++ + A+ Y K +V V Q TLA IL PAI H
Sbjct: 594 DSYTTEKSAEVYTKKTMVFVSQRAMADTLASILSSAQVPAITIH 637
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 31.9 bits (69), Expect = 0.44
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = +3
Query: 510 GKNLVGVVQTGSGKTLAYILP 572
GK+++ QTGSGKT A++LP
Sbjct: 335 GKDILACAQTGSGKTAAFLLP 355
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 394 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 501
P + F +++ P +++ V+ GY TPIQ P+
Sbjct: 296 PCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPL 331
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 31.9 bits (69), Expect = 0.44
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = +3
Query: 510 GKNLVGVVQTGSGKTLAYILP 572
GK+++ QTGSGKT A++LP
Sbjct: 335 GKDILACAQTGSGKTAAFLLP 355
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 394 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 501
P + F +++ P +++ V+ GY TPIQ P+
Sbjct: 296 PCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPL 331
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 31.5 bits (68), Expect = 0.58
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 510 GKNLVGVVQTGSGKTLAYILPAIV 581
G ++V TGSGKTLA+++P ++
Sbjct: 773 GNDVVACAHTGSGKTLAFLIPFVI 796
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 31.5 bits (68), Expect = 0.58
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 510 GKNLVGVVQTGSGKTLAYILPAIV 581
G ++V TGSGKTLA+++P ++
Sbjct: 773 GNDVVACAHTGSGKTLAFLIPFVI 796
>Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical
protein F08A8.8 protein.
Length = 222
Score = 31.1 bits (67), Expect = 0.77
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 108 VETVVPNLEEATNSAIIRLDLATVAVDLEDLEDLVGKKN 224
+ETV+ LE N +RL+ A VA E LE + GK N
Sbjct: 71 IETVILALEAGMNLEDVRLEFAHVATREEILESVFGKLN 109
>AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical
protein Y94H6A.5a protein.
Length = 825
Score = 31.1 bits (67), Expect = 0.77
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +3
Query: 510 GKNLVGVVQTGSGKTLAYILPAI 578
GK++V + +TGSGKT A+++P +
Sbjct: 61 GKDVVAMSRTGSGKTAAFVIPML 83
>AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical
protein Y94H6A.5b protein.
Length = 871
Score = 31.1 bits (67), Expect = 0.77
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +3
Query: 510 GKNLVGVVQTGSGKTLAYILPAI 578
GK++V + +TGSGKT A+++P +
Sbjct: 61 GKDVVAMSRTGSGKTAAFVIPML 83
>Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical
protein R05D11.4 protein.
Length = 581
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 441 RCKDNGLQRTDAYSSSRLADSYVGKNLVGVVQTGSGKTLAYILPAI 578
R +N +++ + +N++ TGSGKTLA+ LP I
Sbjct: 140 RLSENSIRQPSPIQMQSIPFMTERRNVLASAPTGSGKTLAFALPVI 185
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 456 GLQRTDAYSSSRLADSYVGKNLVGVVQTGSGKTLAYILP 572
G +T L + G +++ QTGSGKT A++LP
Sbjct: 571 GYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLP 609
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 501
F EAN + +++ V GY + TPIQ P+
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPL 585
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 456 GLQRTDAYSSSRLADSYVGKNLVGVVQTGSGKTLAYILP 572
G +T L + G +++ QTGSGKT A++LP
Sbjct: 571 GYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLP 609
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 501
F EAN + +++ V GY + TPIQ P+
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPL 585
>U21317-6|AAA62527.1| 313|Caenorhabditis elegans Hypothetical
protein B0495.8a protein.
Length = 313
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 444 CKDNGLQRTDAYSSSRLADSYVGKNLVGVVQT 539
C+D G Q SR+AD Y GK +G+V+T
Sbjct: 191 CEDCGAQLNITDHESRIADHYNGKMHIGMVET 222
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 456 GLQRTDAYSSSRLADSYVGKNLVGVVQTGSGKTLAYILP 572
G +T L + G +++ QTGSGKT A++LP
Sbjct: 571 GYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLP 609
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 501
F EAN + +++ V GY + TPIQ P+
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPL 585
>AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical
protein H20J04.4a protein.
Length = 488
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +3
Query: 510 GKNLVGVVQTGSGKTLAYILPAI 578
G +++G +TG+GKTLA+ +P +
Sbjct: 126 GSDILGCARTGTGKTLAFAIPIL 148
>AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical
protein H20J04.4b protein.
Length = 561
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +3
Query: 510 GKNLVGVVQTGSGKTLAYILPAI 578
G +++G +TG+GKTLA+ +P +
Sbjct: 126 GSDILGCARTGTGKTLAFAIPIL 148
>U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical
protein F55F8.2a protein.
Length = 746
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 424 PDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
P+ V + ++ MG+ EPT IQ+ P A+ +R
Sbjct: 163 PNEVLEAIEQMGFSEPTEIQSAVLPAAVRDR 193
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +3
Query: 513 KNLVGVVQTGSGKTLAYILPAI 578
++++G +TGSGKTLA+ +P +
Sbjct: 194 QDVLGAAETGSGKTLAFGIPLV 215
>AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical
protein Y71G12B.8 protein.
Length = 763
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 507
FE+ N + + GY +PTPIQ P+A+
Sbjct: 150 FEQMNLSRQILKACSGAGYSDPTPIQQACIPVAL 183
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +3
Query: 444 CKDNGLQRTDAYSSSRLADSYVGKNLVGVVQTGSGKTLAYILPAI 578
C G + + + GK++ TG+GKT A++LP +
Sbjct: 163 CSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPIL 207
>AC024881-8|AAK71411.2| 318|Caenorhabditis elegans Serpentine
receptor, class t protein53 protein.
Length = 318
Score = 29.5 bits (63), Expect = 2.3
Identities = 21/84 (25%), Positives = 40/84 (47%)
Frame = -1
Query: 537 FELRQLNSFQHSYRPALSLNRRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLV 358
F++R+ F+ S+RP + +R+ F+ L L+H+ I + +M +L
Sbjct: 217 FKVRR--QFRKSFRPKRTARQRQIFLQAFLLCLIHLSASILYV-----VMQFIEVPKFLT 269
Query: 357 IISVLFDFIW*SFENCRMWIIKVF 286
IIS ++W + C + I +F
Sbjct: 270 IIS---QYLWQLAQGCPVIIYLIF 290
>U64840-7|AAB04965.1| 340|Caenorhabditis elegans Hypothetical
protein ZC317.1 protein.
Length = 340
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 510 GKNLVGVVQTGSGKTLAYILPAIVA 584
G+ LV TG GKT A+++PAI A
Sbjct: 30 GRGLVVEAPTGIGKTYAFLIPAIEA 54
>U53141-4|AAA96106.1| 528|Caenorhabditis elegans Mutator protein 14
protein.
Length = 528
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 510 GKNLVGVVQTGSGKTLAYILPAIVA 584
G+ LV TG GKT A+++PAI A
Sbjct: 130 GRGLVVEAPTGIGKTYAFLIPAIEA 154
>U80447-2|AAO38637.1| 579|Caenorhabditis elegans Hypothetical
protein F55F8.2b protein.
Length = 579
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +3
Query: 513 KNLVGVVQTGSGKTLAYILPAI 578
++++G +TGSGKTLA+ +P +
Sbjct: 27 QDVLGAAETGSGKTLAFGIPLV 48
>U00052-2|AAK95881.1| 404|Caenorhabditis elegans Hypothetical
protein K02F3.6 protein.
Length = 404
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -1
Query: 621 TITSPNRRLVVYVPQWLARCRPTFCRNPFELRQLNSFQHSYRPALSLNR 475
T PN +++ Y+ +L CRP C P L SY + L R
Sbjct: 25 TCNCPNYKIIGYLLYFLCLCRPINCSLPLSRHDLAFGSFSYYLTMFLYR 73
>Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical
protein T20D3.5b protein.
Length = 312
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 160 RIIAEFVASSKFGTTVSTAIIPV 92
++I +FVA S G T+STA P+
Sbjct: 221 QLIGDFVAGSLLGATISTAFFPL 243
>Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical
protein T20D3.5a protein.
Length = 221
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 160 RIIAEFVASSKFGTTVSTAIIPV 92
++I +FVA S G T+STA P+
Sbjct: 130 QLIGDFVAGSLLGATISTAFFPL 152
>U13019-12|AAC24448.1| 316|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 8 protein.
Length = 316
Score = 28.3 bits (60), Expect = 5.4
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Frame = -1
Query: 600 RLVVYVPQWLARCRPTFCRNPFELR---QLNSFQHSYRPALSLNRRRFFVTHCLYTLLHI 430
RL VYVPQ F NPF + L ++ H +P + + F T+ + ++L
Sbjct: 81 RLFVYVPQLCLPAAQFFISNPFLMELYYPLLNYLHCAQPFIQI----FLTTNRMSSVLWP 136
Query: 429 IRKICFFKV-LNRIMNLNATYSYLVI 355
+ F+K+ +RI+ LN + I
Sbjct: 137 VDHEKFWKINFSRILILNLIAPFFFI 162
>U00052-13|AAW88393.1| 608|Caenorhabditis elegans Hypothetical
protein K02F3.12b protein.
Length = 608
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +3
Query: 513 KNLVGVVQTGSGKTLAYILPAIVAH 587
++ V ++ TG GK+L Y LPA++A+
Sbjct: 102 EDAVVILSTGGGKSLCYQLPALLAN 126
>U00052-12|AAK21428.2| 631|Caenorhabditis elegans Hypothetical
protein K02F3.12a protein.
Length = 631
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +3
Query: 513 KNLVGVVQTGSGKTLAYILPAIVAH 587
++ V ++ TG GK+L Y LPA++A+
Sbjct: 125 EDAVVILSTGGGKSLCYQLPALLAN 149
>L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical
protein ZK686.2 protein.
Length = 593
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 537 TGSGKTLAYILPAIVA 584
TGSGKT+ Y+LP + A
Sbjct: 165 TGSGKTICYVLPVLAA 180
>AC006714-20|AAK29723.2| 281|Caenorhabditis elegans Serpentine
receptor, class z protein9 protein.
Length = 281
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/59 (22%), Positives = 31/59 (52%)
Frame = -1
Query: 513 FQHSYRPALSLNRRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVIISVLFD 337
++ +YR N + + + Y + +I + F + + ++NLN T +L I+++F+
Sbjct: 28 YRKAYRFNSERNTATYPIVNSFYKKVALINALYFIESILIVVNLNVTNEWLNKIAIIFN 86
>AC006714-16|AAK29721.3| 281|Caenorhabditis elegans Serpentine
receptor, class z protein8 protein.
Length = 281
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/59 (22%), Positives = 31/59 (52%)
Frame = -1
Query: 513 FQHSYRPALSLNRRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVIISVLFD 337
++ +YR N + + + Y + +I + F + + ++NLN T +L I+++F+
Sbjct: 28 YRKAYRFNSERNTATYPIVNSFYKKVALINALYFIESILIVVNLNVTNEWLNKIAIIFN 86
>Z75552-8|CAD54158.1| 939|Caenorhabditis elegans Hypothetical
protein F28C1.3b protein.
Length = 939
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -2
Query: 317 RTVGCGS*KFLLKGWSETESQLGDACSDLQRILFSHQILQILQIYCHRCQ 168
RTV + L+ G+ E S L + D QR++ S +IL + C R Q
Sbjct: 78 RTVSFPADMDLITGYHEAPSSLFHSYHDSQRVIDSSEILTAYREACQRRQ 127
>Z75552-7|CAA99943.3| 944|Caenorhabditis elegans Hypothetical
protein F28C1.3a protein.
Length = 944
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -2
Query: 317 RTVGCGS*KFLLKGWSETESQLGDACSDLQRILFSHQILQILQIYCHRCQ 168
RTV + L+ G+ E S L + D QR++ S +IL + C R Q
Sbjct: 78 RTVSFPADMDLITGYHEAPSSLFHSYHDSQRVIDSSEILTAYREACQRRQ 127
>Z75539-5|CAD54134.1| 939|Caenorhabditis elegans Hypothetical
protein F28C1.3b protein.
Length = 939
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -2
Query: 317 RTVGCGS*KFLLKGWSETESQLGDACSDLQRILFSHQILQILQIYCHRCQ 168
RTV + L+ G+ E S L + D QR++ S +IL + C R Q
Sbjct: 78 RTVSFPADMDLITGYHEAPSSLFHSYHDSQRVIDSSEILTAYREACQRRQ 127
>Z75539-4|CAA99846.3| 944|Caenorhabditis elegans Hypothetical
protein F28C1.3a protein.
Length = 944
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -2
Query: 317 RTVGCGS*KFLLKGWSETESQLGDACSDLQRILFSHQILQILQIYCHRCQ 168
RTV + L+ G+ E S L + D QR++ S +IL + C R Q
Sbjct: 78 RTVSFPADMDLITGYHEAPSSLFHSYHDSQRVIDSSEILTAYREACQRRQ 127
>AF067945-16|AAC17675.1| 341|Caenorhabditis elegans Serpentine
receptor, class e (epsilon)protein 12 protein.
Length = 341
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -2
Query: 236 DLQRILFSHQILQILQIYCHRCQIETN-YR-RICCL 135
D +S I QI+ +CH+ +++TN +R RI CL
Sbjct: 268 DASIFFYSFAIPQIMTCFCHKWKVQTNTFRIRIGCL 303
>Z81103-2|CAB03213.1| 403|Caenorhabditis elegans Hypothetical
protein M04G12.1b protein.
Length = 403
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +1
Query: 301 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEAN---FPDYVQQGVKTMG 459
P PTVL SP+ V N +V H + +AN D +QQ ++++G
Sbjct: 144 PQPTVLPTSPFHVPTMNNLEQVL-----THQRLLQMTQANPRAVDDLIQQSLRSLG 194
>Z81103-1|CAB03208.2| 457|Caenorhabditis elegans Hypothetical
protein M04G12.1a protein.
Length = 457
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +1
Query: 301 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEAN---FPDYVQQGVKTMG 459
P PTVL SP+ V N +V H + +AN D +QQ ++++G
Sbjct: 171 PQPTVLPTSPFHVPTMNNLEQVL-----THQRLLQMTQANPRAVDDLIQQSLRSLG 221
>Z73098-7|CAA97341.1| 1215|Caenorhabditis elegans Hypothetical
protein T21C9.6 protein.
Length = 1215
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +1
Query: 256 WDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPI 399
+ + L+ FN+ Y+ PT L + +E+YR + + G+ NP+
Sbjct: 165 YSNALLKSFNE-IYNDKPTALIENLKTIEKYRKGNVLNQMGLRHRNPL 211
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,244,009
Number of Sequences: 27780
Number of extensions: 289570
Number of successful extensions: 949
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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