Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060609.seq
(684 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 118 4e-27
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 103 8e-23
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 103 8e-23
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 88 6e-18
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 86 2e-17
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 85 3e-17
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 68 7e-12
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 68 7e-12
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 68 7e-12
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 62 3e-10
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 53 2e-07
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 49 3e-06
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 49 3e-06
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 39 0.004
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 39 0.004
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 39 0.004
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 39 0.004
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 38 0.006
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 37 0.011
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 37 0.014
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 37 0.014
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 36 0.019
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 36 0.019
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 36 0.025
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 36 0.033
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 36 0.033
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 36 0.033
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 36 0.033
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 35 0.044
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 35 0.058
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 34 0.076
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 34 0.10
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 33 0.13
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 33 0.18
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 32 0.41
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 32 0.41
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 32 0.41
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 32 0.41
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 32 0.41
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 31 0.54
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 30 1.2
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 30 1.2
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 30 1.2
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 30 1.6
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 29 2.2
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 29 2.2
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d... 29 2.9
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa... 29 2.9
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 29 2.9
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 29 2.9
At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide... 29 3.8
At5g43990.2 68418.m05382 SET domain-containing protein identical... 28 5.0
At5g43990.1 68418.m05383 SET domain-containing protein identical... 28 5.0
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 28 5.0
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 28 5.0
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 28 5.0
At2g33420.1 68415.m04096 expressed protein 28 5.0
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 28 6.6
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 28 6.6
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes... 28 6.6
At2g25460.1 68415.m03049 expressed protein 27 8.8
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 118 bits (284), Expect = 4e-27
Identities = 58/129 (44%), Positives = 74/129 (57%)
Frame = +1
Query: 259 DSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQ 438
D L PF KNFY P V + EVEEYR E+TV G ++ P++ F + FPDYV
Sbjct: 52 DLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVL 111
Query: 439 QGVKTMGYKEPTPIQAQGWPIAMLERI*LA*FKRVPAKRWPTSCQPLWHINNQPPIRRGD 618
+ VK G+ EPTPIQ+QGWP+AM R + + K + H+N QP + GD
Sbjct: 112 EEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGD 171
Query: 619 GPIALVLAP 645
GPI LVLAP
Sbjct: 172 GPIVLVLAP 180
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 103 bits (248), Expect = 8e-23
Identities = 50/132 (37%), Positives = 76/132 (57%)
Frame = +1
Query: 250 PSWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 429
P + +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 430 YVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LA*FKRVPAKRWPTSCQPLWHINNQPPIR 609
+ + + +G+ EPTPIQAQGWP+A+ R + + K L H++ QP +
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLG 234
Query: 610 RGDGPIALVLAP 645
+ DGPI L+LAP
Sbjct: 235 QDDGPIVLILAP 246
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 103 bits (248), Expect = 8e-23
Identities = 50/132 (37%), Positives = 76/132 (57%)
Frame = +1
Query: 250 PSWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 429
P + +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 430 YVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LA*FKRVPAKRWPTSCQPLWHINNQPPIR 609
+ + + +G+ EPTPIQAQGWP+A+ R + + K L H++ QP +
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLG 234
Query: 610 RGDGPIALVLAP 645
+ DGPI L+LAP
Sbjct: 235 QDDGPIVLILAP 246
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 87.8 bits (208), Expect = 6e-18
Identities = 42/137 (30%), Positives = 70/137 (51%)
Frame = +1
Query: 262 SVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQ 441
S+ +P NK+FY+ ++ + E +YR + VSG +VH P++ FE+ F +
Sbjct: 182 SIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMS 241
Query: 442 GVKTMGYKEPTPIQAQGWPIAMLERI*LA*FKRVPAKRWPTSCQPLWHINNQPPIRRGDG 621
+K Y++PT IQ Q PI + R + K K + HI +QP ++R +G
Sbjct: 242 AIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEG 301
Query: 622 PIALVLAPYQRV*HNQF 672
PI ++ AP + + H F
Sbjct: 302 PIGVICAPTRELAHQIF 318
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 86.2 bits (204), Expect = 2e-17
Identities = 46/139 (33%), Positives = 69/139 (49%)
Frame = +1
Query: 265 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 444
+ +PF KNFY + + + V YR E+ V G +V PIQ++ + +
Sbjct: 351 IEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDT 410
Query: 445 VKTMGYKEPTPIQAQGWPIAMLERI*LA*FKRVPAKRWPTSCQPLWHINNQPPIRRGDGP 624
+K + Y++P PIQAQ PI M R + K K L HI +QPP+ GDGP
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGP 470
Query: 625 IALVLAPYQRV*HNQFSKL 681
I LV+AP + + +S +
Sbjct: 471 IGLVMAPTRELVQQIYSDI 489
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 85.4 bits (202), Expect = 3e-17
Identities = 44/127 (34%), Positives = 64/127 (50%)
Frame = +1
Query: 265 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 444
+ +PF KNFY + + + EV YR E+ V G +V PI+++ + +
Sbjct: 484 IEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDT 543
Query: 445 VKTMGYKEPTPIQAQGWPIAMLERI*LA*FKRVPAKRWPTSCQPLWHINNQPPIRRGDGP 624
+K + Y++P PIQ Q PI M R + K K L HI +QPP+ GDGP
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGP 603
Query: 625 IALVLAP 645
I LV+AP
Sbjct: 604 IGLVMAP 610
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 67.7 bits (158), Expect = 7e-12
Identities = 43/115 (37%), Positives = 54/115 (46%)
Frame = +1
Query: 301 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 480
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 481 QAQGWPIAMLERI*LA*FKRVPAKRWPTSCQPLWHINNQPPIRRGDGPIALVLAP 645
QAQ WPIAM R +A K K H+ R GP LVL+P
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSP 238
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 67.7 bits (158), Expect = 7e-12
Identities = 43/115 (37%), Positives = 54/115 (46%)
Frame = +1
Query: 301 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 480
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 481 QAQGWPIAMLERI*LA*FKRVPAKRWPTSCQPLWHINNQPPIRRGDGPIALVLAP 645
QAQ WPIAM R +A K K H+ R GP LVL+P
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSP 238
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 67.7 bits (158), Expect = 7e-12
Identities = 43/115 (37%), Positives = 54/115 (46%)
Frame = +1
Query: 301 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 480
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 481 QAQGWPIAMLERI*LA*FKRVPAKRWPTSCQPLWHINNQPPIRRGDGPIALVLAP 645
QAQ WPIAM R +A K K H+ R GP LVL+P
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSP 238
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 62.5 bits (145), Expect = 3e-10
Identities = 43/125 (34%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Frame = +1
Query: 283 NKNFYDPH----PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 450
NK+ PH P V SP E+ YR HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 451 TMGYKEPTPIQAQGWPIAMLERI*LA*FKRVPAKRWPTSCQPLWHINNQPPIRRGDGPIA 630
+ G+ PTPIQAQ WPIA+ R +A K K P + + +GP
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLI-PAFILLRHCRNDSRNGPTV 510
Query: 631 LVLAP 645
L+LAP
Sbjct: 511 LILAP 515
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 53.2 bits (122), Expect = 2e-07
Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 4/122 (3%)
Frame = +1
Query: 292 FYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 471
++ P V K S +++ R +TV+G ++ PI+ F + FP + + +K G P
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHP 120
Query: 472 TPIQAQGWPIAMLERI*LA*FKRVPAKRWPTSCQPLWHINNQP----PIRRGDGPIALVL 639
TPIQ QG P+ + R + + + P+ + Q PI G+GPIALV+
Sbjct: 121 TPIQVQGLPVVLSGRDMIG-IAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVI 179
Query: 640 AP 645
P
Sbjct: 180 CP 181
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +3
Query: 447 KDNGLQRTDAYSSSRLADSYVGKNLVGVVQTGSGKTLAYILPAIV 581
KD G+ L G++++G+ TGSGKTL ++LP I+
Sbjct: 113 KDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMII 157
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 48.8 bits (111), Expect = 3e-06
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 4/121 (3%)
Frame = +1
Query: 295 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 474
+ P + K S + + R + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 475 PIQAQGWPIAMLERI*LA*FKRVPAKRWPTSCQPLWHINNQP----PIRRGDGPIALVLA 642
PIQ QG P+ + R + + + P+ I Q PI G+GPI L++
Sbjct: 171 PIQVQGLPVILAGRDMIG-IAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVC 229
Query: 643 P 645
P
Sbjct: 230 P 230
Score = 35.9 bits (79), Expect = 0.025
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +3
Query: 447 KDNGLQRTDAYSSSRLADSYVGKNLVGVVQTGSGKTLAYILPAIV 581
K+ G+ + L G++++G+ TGSGKTL ++LP I+
Sbjct: 162 KEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIM 206
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 48.8 bits (111), Expect = 3e-06
Identities = 31/139 (22%), Positives = 68/139 (48%), Gaps = 3/139 (2%)
Frame = +1
Query: 238 EHASPSWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEA 417
E A+ ++DS ++ ++++ D + + + +R + ++ G + P++ +EE+
Sbjct: 262 EEAADTYDSFDMR-VDRHWSDKRLEEMTERDWRI--FREDFNISYKGSRIPRPMRSWEES 318
Query: 418 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LA*FKRVPAKRWPTSCQPLWHINNQ 597
+ + V+ GYK+P+PIQ P+ + +R + + K L +I+
Sbjct: 319 KLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRL 378
Query: 598 PPI---RRGDGPIALVLAP 645
PP+ +GP A+V+AP
Sbjct: 379 PPMSEENETEGPYAVVMAP 397
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = +3
Query: 447 KDNGLQRTDAYSSSRLADSYVGKNLVGVVQTGSGKTLAYILPAI 578
K+ G R + + +G++++G +TGSGKTLA+++PA+
Sbjct: 170 KEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAV 213
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/79 (24%), Positives = 32/79 (40%)
Frame = +1
Query: 274 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 453
+P K T K EVE+ ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 454 MGYKEPTPIQAQGWPIAML 510
MG+ T IQA+ P M+
Sbjct: 172 MGFARMTQIQAKAIPPLMM 190
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/50 (42%), Positives = 28/50 (56%)
Frame = +1
Query: 367 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
TV GV H F E N + + +T+GYK+PTPIQA P+A+ R
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGR 205
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 444 CKDNGLQRTDAYSSSRLADSYVGKNLVGVVQTGSGKTLAYILPAI 578
C+ G ++ ++ + + G++L TGSGKT A+ LP +
Sbjct: 182 CETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTL 226
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +3
Query: 447 KDNGLQRTDAYSSSRLADSYVGKNLVGVVQTGSGKTLAYILPAI 578
K+ G Q + + GK+++G +TGSGKTLA+++PA+
Sbjct: 105 KEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAV 148
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = +1
Query: 349 RNNHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
R + + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI + R
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Score = 30.7 bits (66), Expect = 0.94
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 510 GKNLVGVVQTGSGKTLAYILPAIVAHKQPT 599
G+ TGSGKT A+I P ++ K+P+
Sbjct: 178 GRECFACAPTGSGKTFAFICPMLIKLKRPS 207
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +3
Query: 444 CKDNGLQRTDAYSSSRLADSYVGKNLVGVVQTGSGKTLAYILPAI 578
CK+ G+++ + + G++++G+ QTGSGKT A+ LP +
Sbjct: 73 CKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPIL 117
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 37.1 bits (82), Expect = 0.011
Identities = 14/24 (58%), Positives = 22/24 (91%)
Frame = +3
Query: 510 GKNLVGVVQTGSGKTLAYILPAIV 581
G++L+G+ +TGSGKTLA+ +PAI+
Sbjct: 151 GRDLIGIAKTGSGKTLAFGIPAIM 174
Score = 33.5 bits (73), Expect = 0.13
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +1
Query: 334 EVEEYRNNHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 507
E E + VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 36.7 bits (81), Expect = 0.014
Identities = 25/67 (37%), Positives = 31/67 (46%)
Frame = +1
Query: 445 VKTMGYKEPTPIQAQGWPIAMLERI*LA*FKRVPAKRWPTSCQPLWHINNQPPIRRGDGP 624
V + G+ P+PIQAQ WPIAM R +A K K H+ R GP
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSR-MGP 302
Query: 625 IALVLAP 645
LVL+P
Sbjct: 303 TILVLSP 309
Score = 31.1 bits (67), Expect = 0.71
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 340 EEYRNNHEVTVSGVEVHNPIQYFEEANFPD 429
E Y HE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 36.7 bits (81), Expect = 0.014
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3
Query: 447 KDNGLQRTDAYSSSRLADSYVGKNLVGVVQTGSGKTLAYILPAIVA-HKQPTA 602
KD G + + L GK+++ +TG+GKT+A++LPAI A K P A
Sbjct: 398 KDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPA 450
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 36.3 bits (80), Expect = 0.019
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +3
Query: 441 RCKDNGLQRTDAYSSSRLADSYVGKNLVGVVQTGSGKTLAYILPAIVAHKQPTAYSER 614
+ K NG++ +S G +LVG +TG GKTLA++LP + + A S+R
Sbjct: 110 KLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKR 167
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 36.3 bits (80), Expect = 0.019
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +3
Query: 501 SYVGKNLVGVVQTGSGKTLAYILPAI 578
+Y GK+++G +TGSGKTLA+ LP +
Sbjct: 225 AYQGKDVIGAAETGSGKTLAFGLPIL 250
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 35.9 bits (79), Expect = 0.025
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +3
Query: 456 GLQRTDAYSSSRLADSYVGKNLVGVVQTGSGKTLAYILPAI 578
G+++ S + GK++V +TGSGKTLAY+LP +
Sbjct: 65 GIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLL 105
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 35.5 bits (78), Expect = 0.033
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +3
Query: 444 CKDNGLQRTDAYSSSRLADSYVGKNLVGVVQTGSGKTLAYILPAIVA 584
C+ G + + L + GK+++G+ QTGSGKT A+ +P + A
Sbjct: 24 CERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQA 70
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 35.5 bits (78), Expect = 0.033
Identities = 14/37 (37%), Positives = 27/37 (72%)
Frame = +3
Query: 468 TDAYSSSRLADSYVGKNLVGVVQTGSGKTLAYILPAI 578
TD S++ + + G++++G +TGSGKTLA+++P +
Sbjct: 95 TDVQSAA-IPHALCGRDILGAARTGSGKTLAFVIPIL 130
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 35.5 bits (78), Expect = 0.033
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 364 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
V SG +V P+ F + + D + ++ Y PTP+Q PI + ER
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAER 189
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 513 KNLVGVVQTGSGKTLAYILPAI 578
++L+ QTGSGKT A+ P I
Sbjct: 189 RDLMACAQTGSGKTAAFCFPII 210
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 35.5 bits (78), Expect = 0.033
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 364 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
V SG +V P+ F + + D + ++ Y PTP+Q PI + ER
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAER 189
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 513 KNLVGVVQTGSGKTLAYILPAI 578
++L+ QTGSGKT A+ P I
Sbjct: 189 RDLMACAQTGSGKTAAFCFPII 210
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 35.1 bits (77), Expect = 0.044
Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 9/142 (6%)
Frame = +1
Query: 247 SPSWD--SVSLQPFNKNFYDPHPTVLKRSPYEVE-EYRNNHEVTVSGVEVHNPIQYFEEA 417
S WD + PF + +P P ++ + + + + SG V P+ F E
Sbjct: 105 SGGWDRREREVNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEI 164
Query: 418 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LA*FKRVPAKRWPTSCQPLWH-INN 594
+ + + ++ Y +PTP+Q PI +LE L + + + C P+ I
Sbjct: 165 DLGEALNLNIRRCKYVKPTPVQRHAIPI-LLEGRDLMACAQTGSGKTAAFCFPIISGIMK 223
Query: 595 QPPIRRGDG-----PIALVLAP 645
++R G P+A++L+P
Sbjct: 224 DQHVQRPRGSRTVYPLAVILSP 245
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 34.7 bits (76), Expect = 0.058
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 447 KDNGLQRTDAYSSSRLADSYVGKNLVGVVQTGSGKTLAYILPAI-VAHKQP 596
KD G + + L GK+++ +TG+GKT+A++LP+I V K P
Sbjct: 70 KDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSP 120
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 34.3 bits (75), Expect = 0.076
Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 10/143 (6%)
Frame = +1
Query: 247 SPSWD--SVSLQPF-NKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEA 417
S WD PF N DP + + E Y + + SG V P+ F E
Sbjct: 93 SGGWDRRDTETNPFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEI 151
Query: 418 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LA*FKRVPAKRWPTSCQPL------ 579
+ + + ++ Y +PTP+Q PI R +A + + + C P+
Sbjct: 152 DLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMA-CAQTGSGKTAAFCFPIISGIMK 210
Query: 580 -WHINNQPPIRRGDGPIALVLAP 645
HI +P RG P+A++L+P
Sbjct: 211 DQHI-ERPRGVRGVYPLAVILSP 232
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 33.9 bits (74), Expect = 0.10
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 6/113 (5%)
Frame = +1
Query: 325 SPYEVEEYRNNHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 498
S ++ + R ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 499 IAMLERI*LA*FKRVPAKR----WPTSCQPLWHINNQPPIRRGDGPIALVLAP 645
A+ + LA K P + + + P +R + P+A+VLAP
Sbjct: 143 AALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRN-PLAMVLAP 194
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +3
Query: 447 KDNGLQRTDAYSSSRLADSYVGKNLVGVVQTGSGKTLAYILPAI 578
K G+++ + L + G++++G +TG+GKTLA+ +P I
Sbjct: 132 KGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPII 175
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +3
Query: 447 KDNGLQRTDAYSSSRLADSYVGKNLVGVVQTGSGKTLAYILPAIVA 584
+D G + + L GK+++ +TG+GKT+A++LP+I A
Sbjct: 96 EDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 31.9 bits (69), Expect = 0.41
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = +3
Query: 456 GLQRTDAYSSSRLADSYVGKNLVGVVQTGSGKTLAYILPAI 578
G+++ + L + G++++G +TG+GKTLA+ +P I
Sbjct: 123 GIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPII 163
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 31.9 bits (69), Expect = 0.41
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = +3
Query: 453 NGLQRTDAYSSSRLADSYVGKNLVGVVQTGSGKTLAYILPAI 578
+G+ + + L++ GK+ + +TG+GK++A++LPAI
Sbjct: 393 SGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 434
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 31.9 bits (69), Expect = 0.41
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 507
FE N V +K GYK PTPIQ + P+ +
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLIL 63
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +3
Query: 510 GKNLVGVVQTGSGKTLAYILPAIVAHKQ 593
G ++V + +TGSGKT A+++P + KQ
Sbjct: 65 GVDVVAMARTGSGKTAAFLIPMLEKLKQ 92
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 31.9 bits (69), Expect = 0.41
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = +3
Query: 453 NGLQRTDAYSSSRLADSYVGKNLVGVVQTGSGKTLAYILPAI 578
+G+ + + L++ GK+ + +TG+GK++A++LPAI
Sbjct: 346 SGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 387
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 31.9 bits (69), Expect = 0.41
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 447 KDNGLQRTDAYSSSRLADSYVGKNLVGVVQTGSGKTLAYILPAI 578
+D+G R + + GK+++ +TGSGKT Y+ P I
Sbjct: 96 RDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPII 139
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 31.5 bits (68), Expect = 0.54
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +3
Query: 510 GKNLVGVVQTGSGKTLAYILPAI 578
GK+ + Q+GSGKTLAY++P I
Sbjct: 411 GKSCIIADQSGSGKTLAYLVPVI 433
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +3
Query: 513 KNLVGVVQTGSGKTLAYILPAIVAHKQPTAY 605
K++V TGSGKTLA++LP I ++ +Y
Sbjct: 54 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSY 84
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +3
Query: 513 KNLVGVVQTGSGKTLAYILPAIVAHKQPTAY 605
K++V TGSGKTLA++LP I ++ +Y
Sbjct: 55 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSY 85
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 394 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 483
PI+ F++ D V +GV GYK+P+ IQ
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQ 49
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 513 KNLVGVVQTGSGKTLAYILPAIVAHKQPTA 602
K++V TGSGKTLAY+LP + ++ A
Sbjct: 150 KSVVLGSHTGSGKTLAYLLPIVQLMREDEA 179
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +1
Query: 454 MGYKEPTPIQAQGWPIAMLERI*LA*FKRVPAKRWPTSCQPLWHI-NNQPPIRRGDGPIA 630
MG++ PT +QAQ P+ + R L K + H+ + P + R G A
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFA 107
Query: 631 LVLAP 645
LV+ P
Sbjct: 108 LVIVP 112
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +1
Query: 244 ASPSWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQY 405
A+ SW++ +QP PHPT + +Y N +++ + + +NP+ +
Sbjct: 263 ANVSWNNPIMQPTGFYCAPPHPTPPPTNNLGYIQYMNGFDLSGTNISGYNPLAW 316
>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam domain
PF04931: DNA polymerase V
Length = 1306
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -2
Query: 290 FLLKGWSETESQLGDACSDLQRILFSHQILQILQIYCH 177
+L + + E +Q G + Q +LF ++L +L+IY H
Sbjct: 982 YLAQIFKEKRNQAGGETAQSQLVLFKLRVLSLLEIYLH 1019
>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
putative ATP-dependent helicases
Length = 1058
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +3
Query: 417 KFS*LCATRCKDNGLQRTDAYSSSRLADSYVGKNLVGVVQTGSGKTLAYILP 572
K S + K GL ++ + ++ + GKN+ T SGK+L Y +P
Sbjct: 377 KLSETTKSALKRIGLNTLYSHQAEAISAALAGKNVAVATMTSSGKSLCYNVP 428
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 510 GKNLVGVVQTGSGKTLAYILPAI 578
GK+L+ TGSGKT ++++P I
Sbjct: 10 GKSLLASADTGSGKTASFLVPII 32
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 5/30 (16%)
Frame = +3
Query: 537 TGSGKTLAYILPAI-----VAHKQPTAYSE 611
TGSGKTLAY+LP + +A K +++SE
Sbjct: 156 TGSGKTLAYLLPILSEIGPLAEKSRSSHSE 185
>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
identical to RNA-dependent RNA polymerase [Arabidopsis
thaliana] gi|8248473|gb|AAF74208
Length = 1196
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 189 LEDLEDLVGKKNSLEVRTCVAQLGFCFTPTF 281
+ D++ +GK V C A++G CF+ T+
Sbjct: 530 VSDIKTWMGKFKDKNVAKCAARMGLCFSSTY 560
>At5g43990.2 68418.m05382 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 740
Score = 28.3 bits (60), Expect = 5.0
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +1
Query: 244 ASPSWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 423
ASPS S +L+ + N + P +L P +E + E+ ++ VE PI ++
Sbjct: 146 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 202
Query: 424 PDYVQQGVKTM 456
PD V +G +M
Sbjct: 203 PDSVDRGDSSM 213
>At5g43990.1 68418.m05383 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 717
Score = 28.3 bits (60), Expect = 5.0
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +1
Query: 244 ASPSWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 423
ASPS S +L+ + N + P +L P +E + E+ ++ VE PI ++
Sbjct: 123 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 179
Query: 424 PDYVQQGVKTM 456
PD V +G +M
Sbjct: 180 PDSVDRGDSSM 190
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +3
Query: 492 LADSYVGKNLVGVVQTGSGKTLAYILPAI 578
L + G++++ +TG+GKTLA+ +P I
Sbjct: 133 LVPALQGRDIIARAKTGTGKTLAFGIPII 161
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 504 YVGKNLVGVVQTGSGKTLAYIL 569
+ G++ + QTGSGKTL Y+L
Sbjct: 111 FTGRDCILHAQTGSGKTLTYLL 132
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +3
Query: 537 TGSGKTLAYILPAIVAHKQPTAY 605
TGSGKTLA+++P + ++ T++
Sbjct: 62 TGSGKTLAFVVPLVEILRRSTSF 84
>At2g33420.1 68415.m04096 expressed protein
Length = 1039
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1
Query: 28 SKRIHSLNKHLQLNPKI 78
S IHSLNK L LNP+I
Sbjct: 789 SSHIHSLNKTLSLNPRI 805
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LA 528
FE+ + G+ G++ P+PIQ + PIA+ R LA
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILA 173
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LA 528
FE+ + G+ G++ P+PIQ + PIA+ R LA
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILA 173
>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes
from this gene
Length = 1035
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 28 SKRIHSLNKHLQLNPKI 78
S ++HSLNK L LNP++
Sbjct: 786 SSQLHSLNKSLSLNPRV 802
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 27.5 bits (58), Expect = 8.8
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -2
Query: 164 ETNYRRICCLLQIWNHRFHGYY 99
E + R+CC++ WN F+ +Y
Sbjct: 80 EEEFERVCCIVGPWNLSFNVFY 101
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,482,334
Number of Sequences: 28952
Number of extensions: 267586
Number of successful extensions: 914
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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