Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060608.seq
         (682 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000065DE9B Cluster: Homolog of Homo sapiens "Kinesin...    35   1.6  
UniRef50_Q5DB75 Cluster: SJCHGC04049 protein; n=1; Schistosoma j...    35   2.1  
UniRef50_Q098M3 Cluster: Putative uncharacterized protein; n=1; ...    34   2.8  
UniRef50_Q09AW8 Cluster: Putative uncharacterized protein; n=1; ...    33   8.5  

>UniRef50_UPI000065DE9B Cluster: Homolog of Homo sapiens
           "Kinesin-like protein KIFC2; n=2; Clupeocephala|Rep:
           Homolog of Homo sapiens "Kinesin-like protein KIFC2 -
           Takifugu rubripes
          Length = 307

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 18/67 (26%), Positives = 33/67 (49%)
 Frame = +1

Query: 286 HLLNQMDMYHHTLDISHMSHQLLIFIHNNHTVHQAHIKMVVTLHRQLLRSLLXIVPAVXE 465
           HLL  ++ Y H   + H + Q  + +  +   H+  +K +   +RQ LR    I+ ++ E
Sbjct: 131 HLLTFLEQYSHFQQLQHQADQYRVQLKRHRVQHRRQMKALRASYRQRLRDKNSIITSL-E 189

Query: 466 RAMDTQQ 486
            A+  QQ
Sbjct: 190 EAISQQQ 196


>UniRef50_Q5DB75 Cluster: SJCHGC04049 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC04049 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 177

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 14/57 (24%), Positives = 32/57 (56%)
 Frame = +1

Query: 265 VGDLLDIHLLNQMDMYHHTLDISHMSHQLLIFIHNNHTVHQAHIKMVVTLHRQLLRS 435
           V ++++   ++Q+D   H L I+H++H L+ F+    +    H+++ +     +LRS
Sbjct: 11  VEEIIESIPVDQIDFLAHQLPINHVTHYLIAFLARQLSGRSRHVELYIRWTHSILRS 67


>UniRef50_Q098M3 Cluster: Putative uncharacterized protein; n=1;
           Stigmatella aurantiaca DW4/3-1|Rep: Putative
           uncharacterized protein - Stigmatella aurantiaca DW4/3-1
          Length = 841

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
 Frame = +1

Query: 277 LDIHLLNQMDMYHHTLDISHMSHQLLIFIHNNHTVHQAHIKMV-VTLH-RQLLRSLLXIV 450
           +D+HLL  +  +   + +  + H L   +H    VH+ H+ ++ V  H R+ L+ L+ +V
Sbjct: 361 VDLHLLEDLGRHIEGVGVQRLEHALDGALHEPGVVHRLHVVVLHVGEHPREHLQVLVGVV 420

Query: 451 PAVXERAMDTQQ 486
            A+ ER+   +Q
Sbjct: 421 LAIRERSGGGEQ 432


>UniRef50_Q09AW8 Cluster: Putative uncharacterized protein; n=1;
           Stigmatella aurantiaca DW4/3-1|Rep: Putative
           uncharacterized protein - Stigmatella aurantiaca DW4/3-1
          Length = 531

 Score = 32.7 bits (71), Expect = 8.5
 Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +1

Query: 310 YHHTLDISHMSHQLLIFIHNNHTVHQAHIKMVVTLHRQ-LLRSLLXIVPAVXERAMDTQQ 486
           +HH + I      L + +  +   H AH+++VV +H +  L   L + P +   A+  + 
Sbjct: 31  FHHPVPIPQALEDLQLRVGGDSRAHAAHLRLVVRVHHEDDLGQRLRLAPGLQPSALHGRL 90

Query: 487 VVQEVTKR 510
           V+++   R
Sbjct: 91  VIRQALLR 98


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 437,678,682
Number of Sequences: 1657284
Number of extensions: 7065501
Number of successful extensions: 21042
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20999
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52892566912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)