Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060608.seq
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces ...    31   0.20 
SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces p...    27   2.5  
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch...    26   5.8  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    25   7.7  

>SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
 Frame = +3

Query: 303 GYVPSHT----GYQPYEPPTADIYTQQSYSAPSSYQDGGYSA 416
           GY P+      G   Y PP  + Y QQ Y+ P  Y  GGY A
Sbjct: 11  GYAPAPPQQAYGGPNYYPPQQN-YPQQGYAPPQGYPQGGYPA 51


>SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 159

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 300 NGYVPS-HTGYQPYEPPTADIYTQQSYSAPSSYQDGGYSAP 419
           N  +P+ +  YQ    PT       +YSAP S+    +SAP
Sbjct: 119 NTLLPALNDAYQACPKPTRKNGNNDTYSAPQSFNGNEFSAP 159


>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
           Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +1

Query: 310 YHHTLDISHMSHQLLIFIHNNHTVHQAHI 396
           ++HT+ ++HM +++   I + + +H A I
Sbjct: 188 FNHTVPLTHMDYKMAYNILHEYRIHNADI 216


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 492 DHLLSIHSPLXNRWNYXQK*PEQ 424
           DHL SI S + N WN  Q  P +
Sbjct: 261 DHLKSIQSEVSNLWNKLQVSPNE 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,727,871
Number of Sequences: 5004
Number of extensions: 27057
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)