Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060608.seq
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0132 + 14711645-14711839,14712641-14712970,14713689-147137... 32 0.48
11_01_0024 + 163588-163897,164303-164406 30 1.5
01_06_1127 - 34699119-34699360,34699446-34699689,34699773-346998... 30 1.5
01_06_0102 - 26447286-26448107,26448248-26448385,26448990-264493... 30 2.0
08_01_0080 + 566509-566746,566904-567151,567347-567532,567639-56... 29 2.6
07_03_1455 - 26659480-26659758,26659907-26660149 29 2.6
03_06_0471 + 34169562-34169892,34170121-34170347 29 3.4
09_04_0094 - 14552970-14553182,14553275-14553679,14553780-145539... 28 6.0
03_03_0260 - 15946321-15946431,15946651-15946716,15947601-15947891 28 7.9
>03_03_0132 +
14711645-14711839,14712641-14712970,14713689-14713751,
14713833-14713906,14714004-14714099,14714705-14714759,
14714867-14714971,14715054-14715135,14715450-14715562,
14715717-14716118
Length = 504
Score = 31.9 bits (69), Expect = 0.48
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 312 PSHTGYQPYEPPTADIYTQQSYSAPSSY-QDGGYSAPAA 425
P ++GY P P A Y Q YS+P Y GG+SAPAA
Sbjct: 434 PGNSGYAP--APGA--YPGQMYSSPMQYGASGGFSAPAA 468
>11_01_0024 + 163588-163897,164303-164406
Length = 137
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Frame = +1
Query: 250 GPVVXVGDLLDI-HLLNQMDMYHHTLDISHMSHQLL--IFIHNNH 375
G V+ GDL+D HLL + H + H+SH+LL +F+++ H
Sbjct: 24 GLVLDNGDLVDDDHLLEHDEQLHVHYLLGHVSHKLLDTLFLYSTH 68
>01_06_1127 - 34699119-34699360,34699446-34699689,34699773-34699844,
34700123-34700218,34700322-34700438,34700520-34700676,
34700770-34700867,34700940-34701098,34701169-34701339,
34701402-34701479,34701548-34701667,34701968-34702085,
34702216-34702346,34702452-34702528,34702858-34702969,
34703057-34703239,34703416-34703517,34703617-34703718,
34703817-34703912,34704481-34704558,34704652-34704744,
34704817-34704938,34705035-34705116,34705204-34705278,
34705385-34705645,34705730-34705854,34705956-34706031,
34706128-34706277,34706359-34706454,34706707-34706814,
34706956-34707056,34707727-34707814,34707894-34708006,
34708278-34708383,34709143-34709247,34709356-34709427,
34709931-34709971,34710067-34710175,34710252-34710317,
34710404-34710540,34710788-34710890,34711416-34711535,
34711707-34711820,34711923-34712008,34712088-34712170,
34713283-34713347,34713444-34713621,34713697-34713776,
34714926-34715049,34715140-34715245,34715399-34715561
Length = 1966
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Frame = -2
Query: 486 LLSIHSPLX-NRWNYXQK*PEQLPVQSNHHLDMSLVHCMIVVYKYQQLVAHMADIQCVMV 310
L+++ PL +RW PE L V++ D+ +V C+I + K Q + D+ ++
Sbjct: 1584 LINLLRPLDPSRWPSPTP-PESLAVKNQKFSDL-VVKCLIKLTKVLQSTIYEVDLDRILQ 1641
Query: 309 HIHL-IEEVDVQQI 271
IH+ ++E+ +++I
Sbjct: 1642 SIHIYLQELGMEEI 1655
>01_06_0102 -
26447286-26448107,26448248-26448385,26448990-26449359,
26449505-26449606,26449696-26449788,26449934-26450181,
26451088-26451274,26451825-26452043,26452464-26452660,
26453545-26453875,26454099-26454457,26455141-26455240,
26455349-26455464,26455547-26455663,26455782-26455880,
26456057-26456131,26456205-26456286,26457724-26457763,
26458685-26458769,26458924-26459055
Length = 1303
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +1
Query: 193 GGGVIRXASSGPPKXGRFXGPVVXVGDLLDIHLLNQMDMYHHTLDISH 336
GGGV + PP+ R GP+V VG + L M H L +SH
Sbjct: 760 GGGVSVAVTRFPPEQKRPIGPLVVVGVRDGVLWLVDRYMCAHALSLSH 807
>08_01_0080 +
566509-566746,566904-567151,567347-567532,567639-567734,
567836-567907,567990-568106,570531-571676
Length = 700
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +3
Query: 324 GYQ--PYEPPTADIYTQQSY-SAPSSYQDGGYSAPAAAQ 431
GYQ P +P + Y Q Y S P+S Q G +APAA Q
Sbjct: 604 GYQGAPADPNYGNAYPQAGYGSTPASGQAGYAAAPAAGQ 642
>07_03_1455 - 26659480-26659758,26659907-26660149
Length = 173
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 112 CSHLRVPHHHMLPVRLQLSHRXPPXKRGGGVIRXASSGPPKXGR 243
CS R P H P L PP + G G +R A+ PP+ R
Sbjct: 72 CSRCR-PGDHRNPAASSLHPTAPPLRAGPGHLRPATRRPPRQVR 114
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 300 NGYVPSHTGYQPYEPPTADIYTQQSYSAPSSYQDGGYSAP 419
+GY PS GY P P + Y QQ P+ Y G+ P
Sbjct: 70 SGYPPSQGGYPPGAYPPSG-YPQQPGYPPAGYPGHGHGPP 108
>09_04_0094 -
14552970-14553182,14553275-14553679,14553780-14553902,
14554156-14554367,14554486-14554514,14554661-14555166
Length = 495
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 127 VPHHHMLPVRLQLSHRXPPXKR 192
+ HHH+LP RL H PP R
Sbjct: 5 IHHHHLLPPRLLSVHPQPPRLR 26
>03_03_0260 - 15946321-15946431,15946651-15946716,15947601-15947891
Length = 155
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +2
Query: 398 RWWLLCT-GSCSGHFWX*FQRLXSGLWILNRWSRKLRKDG 514
RWW C G CSG + G W + R+ R+DG
Sbjct: 21 RWWRGCGYGRCSGEIHTAAHQAHCGRWRSSGPQRRQRRDG 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,806,137
Number of Sequences: 37544
Number of extensions: 232543
Number of successful extensions: 695
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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