Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060608.seq
         (682 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21305| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.21 
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   6.1  
SB_10408| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  

>SB_21305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 286 HLLNQMDMYHHTLDISHMSHQLLIFIH-NNHTVHQAHI 396
           H L  +DM  HTL + HMS   L  +H ++HT+   H+
Sbjct: 94  HTLQVIDMSSHTLQVLHMSSHTLQVLHMSSHTLQVLHM 131



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 286 HLLNQMDMYHHTLDISHMSHQLLIFIH-NNHTVHQAHI 396
           H L  + M  HTL + HMS   L  +H ++HT+   H+
Sbjct: 114 HTLQVLHMSSHTLQVLHMSSHTLQVLHMSSHTLQVLHM 151



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 286 HLLNQMDMYHHTLDISHM-SHQLLIFIHNNHTVHQAHI 396
           H L  + M  HTL + HM SH L +   ++HT+   H+
Sbjct: 134 HTLQVLHMSSHTLQVLHMSSHTLQVIDMSSHTLQVLHM 171



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 286 HLLNQMDMYHHTLDISHMSHQLLIFIH-NNHTVHQAHI 396
           H L  +DM  HTL +  MS   L  +H ++HT+   H+
Sbjct: 4   HTLQVIDMSSHTLQVIDMSSHTLQVLHMSSHTLQVLHM 41



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 286 HLLNQMDMYHHTLDISHMSHQLLIFIH-NNHTVHQAHI 396
           H L  +DM  HTL +  MS   L  +H ++HT+   H+
Sbjct: 84  HTLQVIDMSSHTLQVIDMSSHTLQVLHMSSHTLQVLHM 121



 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 286 HLLNQMDMYHHTLDISHMSHQLLIFIH-NNHTVHQAHI 396
           H L  + M  HTL + HMS   L  I  ++HT+   H+
Sbjct: 24  HTLQVLHMSSHTLQVLHMSSNTLQVIDMSSHTLQVLHM 61


>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 4303

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 109  LCSHLRVPHHHMLPVRLQLSHRXPPXKRG 195
            +  H+R+ HH + P R +  HR  P K G
Sbjct: 1284 MTKHIRMVHHKLWPYRCEHCHRQFPSKVG 1312


>SB_10408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +1

Query: 307 MYHHTLDISHMSHQLLIFIHNN--HTVHQAHIKMVVTLHRQLLRSLLXIV 450
           +YH  L +S +S  ++I I+ N  H +  +   + +  H +LL+S   ++
Sbjct: 110 LYHRHLHLSKLSKSVIIIIYQNHQHPLSSSSSFIKIRYHHRLLKSSKSVI 159


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,663,348
Number of Sequences: 59808
Number of extensions: 228406
Number of successful extensions: 716
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)