Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060608.seq
         (682 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16667-1|CAA34657.1|  431|Homo sapiens protein ( Human HOX2G mRN...    30   8.8  
U59298-1|AAD10852.1|  431|Homo sapiens hox homeobox transcriptio...    30   8.8  
U36561-1|AAA79948.1|  528|Homo sapiens fus-like protein protein.       30   8.8  
AF287967-5|AAG31555.1|  431|Homo sapiens homeobox B3 protein.          30   8.8  
AF144094-1|AAF05903.1| 3530|Homo sapiens unconventional myosin-1...    30   8.8  
AB209423-1|BAD92660.1| 1103|Homo sapiens myosin XV variant protein.    30   8.8  

>X16667-1|CAA34657.1|  431|Homo sapiens protein ( Human HOX2G mRNA
           from the Hox2 locus. ).
          Length = 431

 Score = 29.9 bits (64), Expect = 8.8
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = -1

Query: 358 ISAVGGSYG*YPVCDGTYPFD*GGGCPTDPLXPPRG 251
           + A GG+YG  P   G+ P   GGG   DPL PP G
Sbjct: 334 LQANGGAYG-TPTMQGS-PVYVGGGGYADPLPPPAG 367


>U59298-1|AAD10852.1|  431|Homo sapiens hox homeobox transcription
           factor HOXB3 protein.
          Length = 431

 Score = 29.9 bits (64), Expect = 8.8
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = -1

Query: 358 ISAVGGSYG*YPVCDGTYPFD*GGGCPTDPLXPPRG 251
           + A GG+YG  P   G+ P   GGG   DPL PP G
Sbjct: 334 LQANGGAYG-TPTMQGS-PVYVGGGGYADPLPPPAG 367


>U36561-1|AAA79948.1|  528|Homo sapiens fus-like protein protein.
          Length = 528

 Score = 29.9 bits (64), Expect = 8.8
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +3

Query: 294 QSNGYVPSHTGYQPYEPPTADIYTQQSYSAPSSYQDGGY 410
           QS G  P+  G Q Y   ++  Y QQSYS  S   D GY
Sbjct: 12  QSYGAYPTQPG-QGYSQQSSQPYGQQSYSGYSQSTDTGY 49


>AF287967-5|AAG31555.1|  431|Homo sapiens homeobox B3 protein.
          Length = 431

 Score = 29.9 bits (64), Expect = 8.8
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = -1

Query: 358 ISAVGGSYG*YPVCDGTYPFD*GGGCPTDPLXPPRG 251
           + A GG+YG  P   G+ P   GGG   DPL PP G
Sbjct: 334 LQANGGAYG-TPTMQGS-PVYVGGGGYADPLPPPAG 367


>AF144094-1|AAF05903.1| 3530|Homo sapiens unconventional myosin-15
           protein.
          Length = 3530

 Score = 29.9 bits (64), Expect = 8.8
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +3

Query: 303 GYVPSHTGYQPYEPPTADIYTQQSYSAPSSYQDG 404
           GY   + GY  YEPP A       YS+P SY DG
Sbjct: 302 GYTYGY-GYDDYEPPYAP---PSGYSSPYSYHDG 331


>AB209423-1|BAD92660.1| 1103|Homo sapiens myosin XV variant protein.
          Length = 1103

 Score = 29.9 bits (64), Expect = 8.8
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +3

Query: 303 GYVPSHTGYQPYEPPTADIYTQQSYSAPSSYQDG 404
           GY   + GY  YEPP A       YS+P SY DG
Sbjct: 179 GYTYGY-GYDDYEPPYAP---PSGYSSPYSYHDG 208


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,763,228
Number of Sequences: 237096
Number of extensions: 1178032
Number of successful extensions: 3090
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3090
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7727256732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)