Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060608.seq
(682 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein ( D.me... 32 0.83
M19537-1|AAA28827.1| 408|Drosophila melanogaster RNA polymerase... 32 0.83
AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p pro... 32 0.83
AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA... 32 0.83
AY118621-1|AAM49990.1| 1168|Drosophila melanogaster RE03558p pro... 31 1.1
AE014296-813|AAF47875.2| 1168|Drosophila melanogaster CG1273-PB ... 31 1.1
BT016021-1|AAV36906.1| 662|Drosophila melanogaster RE15373p pro... 31 1.9
AE014298-2002|AAN09579.1| 662|Drosophila melanogaster CG11584-P... 31 1.9
BT021299-1|AAX33447.1| 345|Drosophila melanogaster RE22786p pro... 30 3.4
AE014298-2003|AAN09580.1| 345|Drosophila melanogaster CG32603-P... 30 3.4
AY052072-1|AAK93496.1| 2409|Drosophila melanogaster SD02860p pro... 29 4.5
>M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein (
D.melanogaster RpII215gene encoding RNA polymerase II,
largest subunit, completecds. ).
Length = 1896
Score = 31.9 bits (69), Expect = 0.83
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +3
Query: 294 QSNGYVPSHTGYQPYEP---PTADIYTQQSYSAPSS--YQDGGYSAPAAA 428
QS GY PS +GY P P PT + S++ S Y G +P+++
Sbjct: 1629 QSTGYSPSSSGYSPTSPVYSPTVQFQSSPSFAGSGSNIYSPGNAYSPSSS 1678
>M19537-1|AAA28827.1| 408|Drosophila melanogaster RNA polymerase II
largest subunit protein.
Length = 408
Score = 31.9 bits (69), Expect = 0.83
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +3
Query: 294 QSNGYVPSHTGYQPYEP---PTADIYTQQSYSAPSS--YQDGGYSAPAAA 428
QS GY PS +GY P P PT + S++ S Y G +P+++
Sbjct: 148 QSTGYSPSSSGYSPTSPVYSPTVQFQSSPSFAGSGSNIYSPGNAYSPSSS 197
>AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p protein.
Length = 1429
Score = 31.9 bits (69), Expect = 0.83
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +3
Query: 294 QSNGYVPSHTGYQPYEP---PTADIYTQQSYSAPSS--YQDGGYSAPAAA 428
QS GY PS +GY P P PT + S++ S Y G +P+++
Sbjct: 1169 QSTGYSPSSSGYSPTSPVYSPTVQFQSSPSFAGSGSNIYSPGNAYSPSSS 1218
>AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA
protein.
Length = 1887
Score = 31.9 bits (69), Expect = 0.83
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +3
Query: 294 QSNGYVPSHTGYQPYEP---PTADIYTQQSYSAPSS--YQDGGYSAPAAA 428
QS GY PS +GY P P PT + S++ S Y G +P+++
Sbjct: 1627 QSTGYSPSSSGYSPTSPVYSPTVQFQSSPSFAGSGSNIYSPGNAYSPSSS 1676
>AY118621-1|AAM49990.1| 1168|Drosophila melanogaster RE03558p protein.
Length = 1168
Score = 31.5 bits (68), Expect = 1.1
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +3
Query: 309 VPSHTGYQPYEPPTADIYTQQSYSAPS 389
V S++G + Y PP AD TQ+S SAP+
Sbjct: 1093 VRSNSGIRTYRPPAADEETQRSASAPA 1119
>AE014296-813|AAF47875.2| 1168|Drosophila melanogaster CG1273-PB
protein.
Length = 1168
Score = 31.5 bits (68), Expect = 1.1
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +3
Query: 309 VPSHTGYQPYEPPTADIYTQQSYSAPS 389
V S++G + Y PP AD TQ+S SAP+
Sbjct: 1093 VRSNSGIRTYRPPAADEETQRSASAPA 1119
>BT016021-1|AAV36906.1| 662|Drosophila melanogaster RE15373p
protein.
Length = 662
Score = 30.7 bits (66), Expect = 1.9
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +3
Query: 312 PSHTGYQPYEPPTADIYTQQSYSAPSSYQDGGYSAPAAA 428
P+ Q Y P QQ+YSAP+ YSAPA A
Sbjct: 297 PAPAIQQTYSAPAPAPVVQQTYSAPAPAPQQTYSAPAPA 335
>AE014298-2002|AAN09579.1| 662|Drosophila melanogaster CG11584-PB
protein.
Length = 662
Score = 30.7 bits (66), Expect = 1.9
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +3
Query: 312 PSHTGYQPYEPPTADIYTQQSYSAPSSYQDGGYSAPAAA 428
P+ Q Y P QQ+YSAP+ YSAPA A
Sbjct: 297 PAPAIQQTYSAPAPAPVVQQTYSAPAPAPQQTYSAPAPA 335
>BT021299-1|AAX33447.1| 345|Drosophila melanogaster RE22786p
protein.
Length = 345
Score = 29.9 bits (64), Expect = 3.4
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 9/53 (16%)
Frame = +3
Query: 297 SNGYVP-----SHTGYQPYEPPTADIYTQQSYSAP----SSYQDGGYSAPAAA 428
+N Y+P + T Y+ Y+ + ++Y AP S+Y+ YSAPAA+
Sbjct: 23 TNTYLPPKSAAASTSYESYQAAPVEAAASETYVAPAAAASTYESESYSAPAAS 75
Score = 29.5 bits (63), Expect = 4.5
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 321 TGYQPYEPPTADIYTQQSYSAPSSYQDGGYSAPAAAQVT 437
T QP A + T+ +YSAP+ YSAPA T
Sbjct: 98 TNEQPAASYVAPVVTKTTYSAPAVSSYSSYSAPAVVAKT 136
>AE014298-2003|AAN09580.1| 345|Drosophila melanogaster CG32603-PA
protein.
Length = 345
Score = 29.9 bits (64), Expect = 3.4
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 9/53 (16%)
Frame = +3
Query: 297 SNGYVP-----SHTGYQPYEPPTADIYTQQSYSAP----SSYQDGGYSAPAAA 428
+N Y+P + T Y+ Y+ + ++Y AP S+Y+ YSAPAA+
Sbjct: 23 TNTYLPPKSAAASTSYESYQAAPVEAAASETYVAPAAAASTYESESYSAPAAS 75
Score = 29.5 bits (63), Expect = 4.5
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 321 TGYQPYEPPTADIYTQQSYSAPSSYQDGGYSAPAAAQVT 437
T QP A + T+ +YSAP+ YSAPA T
Sbjct: 98 TNEQPAASYVAPVVTKTTYSAPAVSSYSSYSAPAVVAKT 136
>AY052072-1|AAK93496.1| 2409|Drosophila melanogaster SD02860p
protein.
Length = 2409
Score = 29.5 bits (63), Expect = 4.5
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 297 SNGYVPSHTGYQPYEPPTADIYTQQSYSAPSSYQ-DGGYSAP 419
+ GY PS+ G + Y P + + SSYQ +GGY P
Sbjct: 692 NGGYQPSYQGNEGYTPTYQNPFEGYHQPNQSSYQTNGGYQPP 733
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,644,838
Number of Sequences: 53049
Number of extensions: 383826
Number of successful extensions: 1314
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1309
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2971922400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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