Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060608.seq
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ...    29   3.1  
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr...    28   7.1  

>Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical
           protein B0035.1b protein.
          Length = 341

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 333 PYEPPTADIYTQQSYSAPSSYQDGGY 410
           P  PP  + +  Q Y AP  Y  GGY
Sbjct: 227 PRTPPYENEHEHQDYQAPDDYNQGGY 252


>Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical
           protein B0035.1a protein.
          Length = 298

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 333 PYEPPTADIYTQQSYSAPSSYQDGGY 410
           P  PP  + +  Q Y AP  Y  GGY
Sbjct: 227 PRTPPYENEHEHQDYQAPDDYNQGGY 252


>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
           protein W09B6.1a protein.
          Length = 2054

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +1

Query: 292 LNQMDMYHHTLDISHMSHQLLIFIHN 369
           L Q+   HHT +IS+++ ++L+F H+
Sbjct: 906 LRQIGNLHHTEEISNLAREILLFYHS 931


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 318 HTGYQPYEPPTADIYTQQSY 377
           H  Y P+ PP++D YT   Y
Sbjct: 241 HVAYMPHPPPSSDCYTYDYY 260


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 318 HTGYQPYEPPTADIYTQQSY 377
           H  Y P+ PP++D YT   Y
Sbjct: 241 HVAYMPHPPPSSDCYTYDYY 260


>U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical
           protein C12D12.1b protein.
          Length = 648

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 318 HTGYQPYEPPTADIYTQQSY 377
           H  Y P+ PP++D YT   Y
Sbjct: 241 HVAYMPHPPPSSDCYTYDYY 260


>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
           protein F12F6.6 protein.
          Length = 1126

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +3

Query: 327 YQPYEPPTADI--YTQQSYSAPSSYQDGGYSAPAAAQ 431
           YQP  PP   +  Y QQ ++    +Q  G+  PAA Q
Sbjct: 3   YQP--PPNGQMPGYPQQQFNQQPQFQSNGFPPPAAPQ 37


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,958,879
Number of Sequences: 27780
Number of extensions: 169877
Number of successful extensions: 564
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)