Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060608.seq
         (682 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g70985.1 68414.m08189 hydroxyproline-rich glycoprotein family...    28   5.0  
At1g23000.1 68414.m02874 heavy-metal-associated domain-containin...    28   5.0  
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei...    27   8.7  
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei...    27   8.7  

>At1g70985.1 68414.m08189 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 135

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +3

Query: 294 QSNGYVPSHTGYQPYEPPTADIYTQQSYSAPSSY---QDGGYSAP 419
           Q  GY P  TGY  Y PP++      +Y +P  Y     GGY+ P
Sbjct: 46  QPAGYYPQPTGY--YPPPSSS--NVPNYPSPPYYGGNPSGGYNGP 86


>At1g23000.1 68414.m02874 heavy-metal-associated domain-containing
           protein similar to farnesylated protein ATFP3
           [GI:4097547]; contains PF00403 Heavy-metal-associated
           domain
          Length = 358

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 306 YVPSHTGYQPYEPPTADIYTQQS 374
           Y PS   Y PY P  +D Y QQS
Sbjct: 313 YTPSPYSYYPYYPYASDQYQQQS 335


>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
           weak similarity to SP|Q01844 RNA-binding protein EWS
           (EWS oncogene) (Ewing sarcoma breakpoint region 1
           protein) {Homo sapiens}; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00641: Zn-finger in Ran binding protein and others
          Length = 422

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +3

Query: 309 VPSHTGYQPYEPPTADIYTQQSYSAPSSYQDG--GYSAP 419
           +PS+ G   Y PPT   Y  ++   P+SY  G   Y  P
Sbjct: 188 IPSYDGSGSYPPPTG--YGMEAVPPPTSYSGGPPSYGGP 224


>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
           weak similarity to SP|Q01844 RNA-binding protein EWS
           (EWS oncogene) (Ewing sarcoma breakpoint region 1
           protein) {Homo sapiens}; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00641: Zn-finger in Ran binding protein and others
          Length = 422

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +3

Query: 309 VPSHTGYQPYEPPTADIYTQQSYSAPSSYQDG--GYSAP 419
           +PS+ G   Y PPT   Y  ++   P+SY  G   Y  P
Sbjct: 188 IPSYDGSGSYPPPTG--YGMEAVPPPTSYSGGPPSYGGP 224


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,511,384
Number of Sequences: 28952
Number of extensions: 157909
Number of successful extensions: 502
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)