Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060607.seq
         (554 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0693 + 6131714-6132531,6133038-6135027                           28   4.4  
03_02_0662 - 10250235-10250433,10250692-10253105                       28   4.4  

>08_01_0693 + 6131714-6132531,6133038-6135027
          Length = 935

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 426 FVXVLYDGDDFIEFGRRHGQS 488
           F+ V Y G+D++   R+HG S
Sbjct: 512 FISVAYSGEDYLSIARQHGYS 532


>03_02_0662 - 10250235-10250433,10250692-10253105
          Length = 870

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 370 RSDSSIAIXCSSTYKDXNFLXRCSMMGMILSSLV 471
           RSDS+ +  C+S Y+  N + RCS +   L+ +V
Sbjct: 513 RSDSNNSRLCASAYETLNEIVRCSHISENLNMIV 546


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,441,442
Number of Sequences: 37544
Number of extensions: 207687
Number of successful extensions: 436
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)