Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060607.seq
         (554 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC130441-1|AAI30442.1|  585|Homo sapiens piggyBac transposable e...    75   2e-13
AK057200-1|BAB71379.1|  581|Homo sapiens DR1) mRNA.  protein.          75   2e-13
AK094816-1|BAC04428.1|  332|Homo sapiens protein ( Homo sapiens ...    48   2e-05
AF333072-1|AAL16779.1|  253|Homo sapiens gag protein protein.          29   8.3  

>BC130441-1|AAI30442.1|  585|Homo sapiens piggyBac transposable
           element derived 4 protein.
          Length = 585

 Score = 74.5 bits (175), Expect = 2e-13
 Identities = 36/85 (42%), Positives = 53/85 (62%), Gaps = 4/85 (4%)
 Frame = -1

Query: 506 HFXXNATLPVPPTK----LDKIIPIIEHLXKKFXSLYVLEQXIAIDESLLLWKGRLSFAQ 339
           HF  N+++    +K    L KI P+ + L  KF ++Y   + IA+DESL+L+KG L+  Q
Sbjct: 205 HFVNNSSISAGQSKAQISLQKIKPVFDFLVNKFSTVYTPNRNIAVDESLMLFKGPLAMKQ 264

Query: 338 KIATKRARVGIKSYELCESXTGXLW 264
            + TKR R G+K Y LCES +G +W
Sbjct: 265 YLPTKRVRFGLKLYVLCESQSGYVW 289



 Score = 48.0 bits (109), Expect = 2e-05
 Identities = 23/54 (42%), Positives = 38/54 (70%)
 Frame = -3

Query: 168 TAQIVLNLXRPLFDKGHTLIMDNFYNAPLLSRILKVQHKTDSMGTLRLNREFVP 7
           +++IVL L   L  +G+ + +DNF  +P+L R L  Q++TD++GT RLNR+ +P
Sbjct: 310 SSRIVLTLVNDLLGQGYCVFLDNFNISPMLFRELH-QNRTDAVGTARLNRKQIP 362


>AK057200-1|BAB71379.1|  581|Homo sapiens DR1) mRNA.  protein.
          Length = 581

 Score = 74.5 bits (175), Expect = 2e-13
 Identities = 36/85 (42%), Positives = 53/85 (62%), Gaps = 4/85 (4%)
 Frame = -1

Query: 506 HFXXNATLPVPPTK----LDKIIPIIEHLXKKFXSLYVLEQXIAIDESLLLWKGRLSFAQ 339
           HF  N+++    +K    L KI P+ + L  KF ++Y   + IA+DESL+L+KG L+  Q
Sbjct: 205 HFVNNSSISAGQSKAQISLQKIKPVFDFLVNKFSTVYTPNRNIAVDESLMLFKGPLAMKQ 264

Query: 338 KIATKRARVGIKSYELCESXTGXLW 264
            + TKR R G+K Y LCES +G +W
Sbjct: 265 YLPTKRVRFGLKLYVLCESQSGYVW 289



 Score = 48.0 bits (109), Expect = 2e-05
 Identities = 23/54 (42%), Positives = 38/54 (70%)
 Frame = -3

Query: 168 TAQIVLNLXRPLFDKGHTLIMDNFYNAPLLSRILKVQHKTDSMGTLRLNREFVP 7
           +++IVL L   L  +G+ + +DNF  +P+L R L  Q++TD++GT RLNR+ +P
Sbjct: 310 SSRIVLTLVNDLLGQGYCVFLDNFNISPMLFRELH-QNRTDAVGTARLNRKQIP 362


>AK094816-1|BAC04428.1|  332|Homo sapiens protein ( Homo sapiens
           cDNA FLJ37497 fis, clone BRAWH2015853. ).
          Length = 332

 Score = 48.0 bits (109), Expect = 2e-05
 Identities = 23/54 (42%), Positives = 38/54 (70%)
 Frame = -3

Query: 168 TAQIVLNLXRPLFDKGHTLIMDNFYNAPLLSRILKVQHKTDSMGTLRLNREFVP 7
           +++IVL L   L  +G+ + +DNF  +P+L R L  Q++TD++GT RLNR+ +P
Sbjct: 57  SSRIVLTLVNDLLGQGYCVFLDNFNISPMLFRELH-QNRTDAVGTARLNRKQIP 109



 Score = 43.6 bits (98), Expect = 5e-04
 Identities = 18/36 (50%), Positives = 25/36 (69%)
 Frame = -1

Query: 371 LLWKGRLSFAQKIATKRARVGIKSYELCESXTGXLW 264
           +L+KG L+  Q + TKR R G+K Y LCES +G +W
Sbjct: 1   MLFKGPLAMKQYLPTKRVRFGLKLYVLCESQSGYVW 36


>AF333072-1|AAL16779.1|  253|Homo sapiens gag protein protein.
          Length = 253

 Score = 29.5 bits (63), Expect = 8.3
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 80  KSGAL*KLSIINVWPLSKSGLXKFSTIWAVALSGSSDSC 196
           + G +  L++ N WP+ K+ L  F T  +V++S +  SC
Sbjct: 70  RKGNIIPLTVWNDWPIIKAALEPFQTEDSVSVSDAPGSC 108


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,970,274
Number of Sequences: 237096
Number of extensions: 1163302
Number of successful extensions: 2184
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2181
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5533942988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)