Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060607.seq
         (554 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069639-1|AAL39784.1|  622|Drosophila melanogaster LD40589p pro...    32   0.45 
AE014297-823|AAF54293.1|  622|Drosophila melanogaster CG9839-PA ...    32   0.45 

>AY069639-1|AAL39784.1|  622|Drosophila melanogaster LD40589p
           protein.
          Length = 622

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = -1

Query: 533 PXXRHQTLFHFXXNATLPVPPTKLDKIIP--IIEHLXKKFXSLYVLEQXIAIDESLLLWK 360
           P  R+Q L H   N   P       K+    +++ + ++   +Y+  Q + ++E + LWK
Sbjct: 218 PLERYQQLLH-CLNFDAPQLQAGRAKVKNSLLLDFINERMEEIYICGQQLVLNEPITLWK 276

Query: 359 GRLSFAQKIATK 324
           G L +  ++  K
Sbjct: 277 GALRYQDELPNK 288


>AE014297-823|AAF54293.1|  622|Drosophila melanogaster CG9839-PA
           protein.
          Length = 622

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = -1

Query: 533 PXXRHQTLFHFXXNATLPVPPTKLDKIIP--IIEHLXKKFXSLYVLEQXIAIDESLLLWK 360
           P  R+Q L H   N   P       K+    +++ + ++   +Y+  Q + ++E + LWK
Sbjct: 218 PLERYQQLLH-CLNFDAPQLQAGRAKVKNSLLLDFINERMEEIYICGQQLVLNEPITLWK 276

Query: 359 GRLSFAQKIATK 324
           G L +  ++  K
Sbjct: 277 GALRYQDELPNK 288


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,622,187
Number of Sequences: 53049
Number of extensions: 347676
Number of successful extensions: 662
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2131214097
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)