Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060607.seq
         (554 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   2.7  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   3.6  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   4.8  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 331 AIFCANERRPFQRRSDSSIA 390
           A+ C NE RP +RR+   +A
Sbjct: 323 ALGCWNENRPLKRRNIEIVA 342


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 331 AIFCANERRPFQRRSDSSIA 390
           AI C NE +P QR++   +A
Sbjct: 327 AIGCWNEHQPLQRQNMDMVA 346


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 331 AIFCANERRPFQRRSDSSIA 390
           AI C NE +P QR +   +A
Sbjct: 327 AIGCWNEHQPLQRENMDMVA 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,768
Number of Sequences: 438
Number of extensions: 2092
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)