Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060604.seq
         (669 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9T9H1 Cluster: NADH-ubiquinone oxidoreductase chain 5;...    35   1.5  
UniRef50_A5WDE3 Cluster: Integrase, catalytic region; n=11; Mora...    35   2.0  
UniRef50_A5KBC6 Cluster: Phosphatidylinositol 3-and 4-kinase, pu...    33   4.7  
UniRef50_A5KA36 Cluster: Putative uncharacterized protein; n=3; ...    33   6.2  
UniRef50_Q5K6V0 Cluster: Putative uncharacterized protein; n=2; ...    33   8.2  

>UniRef50_Q9T9H1 Cluster: NADH-ubiquinone oxidoreductase chain 5;
           n=1; Halocynthia roretzi|Rep: NADH-ubiquinone
           oxidoreductase chain 5 - Halocynthia roretzi (Sea
           squirt)
          Length = 551

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 32/88 (36%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
 Frame = -1

Query: 606 GSARVNRKRPG*CLIFRNVMMMMNSSFGIR*IFFQDTVMFSFFQDTVVDSFVRIQ*FSFF 427
           G   +  KRPG  LI  + +MMM   F +   F +D VM SFF       F+    F  F
Sbjct: 355 GHGELMMKRPGFLLILGSGVMMMGFPF-LSGFFTKDLVMESFF-----GGFLNRWVFFLF 408

Query: 426 QDTVIFLL*FSGYSMWIQWLSLLS-GYG 346
             +V+F     GYS WI    L+S G+G
Sbjct: 409 LFSVLFT---CGYSTWIIGKMLISWGWG 433


>UniRef50_A5WDE3 Cluster: Integrase, catalytic region; n=11;
           Moraxellaceae|Rep: Integrase, catalytic region -
           Psychrobacter sp. PRwf-1
          Length = 284

 Score = 34.7 bits (76), Expect = 2.0
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +3

Query: 312 TQPLYPERRLNHRILKEDSTTVSTYYIH*IKEEKSLYPERRK---ITVS*RKNQPLYP 476
           TQ  Y   RL H+ L      +S Y +  IK+E  +Y +R K   +T     N+P+YP
Sbjct: 53  TQQSYGHERL-HQHLTSQGHDISLYMVRQIKQEHGIYCKRHKRSKVTTDSNHNKPVYP 109


>UniRef50_A5KBC6 Cluster: Phosphatidylinositol 3-and 4-kinase,
           putative; n=5; Plasmodium|Rep: Phosphatidylinositol
           3-and 4-kinase, putative - Plasmodium vivax
          Length = 1032

 Score = 33.5 bits (73), Expect = 4.7
 Identities = 28/99 (28%), Positives = 45/99 (45%)
 Frame = +2

Query: 125 NLRSESRYNILVAALRDPKNPGPRIVSVYLKSSSPYLEENKRNPKSVQNQSAPYYIHRIL 304
           NL    + N ++   +  K P  RI+S YL+S+S    E K+  K  +     + I    
Sbjct: 64  NLPGGVKVNDIIIFYKGIKLPNYRIISTYLESTS--RNEKKKKKKKKKLNKLYWAIKDTN 121

Query: 305 KEDSTTVS*KKTQPPYPERRLNHCIHILYPLNQRRKITV 421
              S  V  +K+ PP+ E  L H I + +  N   K+T+
Sbjct: 122 PNASIRVIDQKSYPPFFENIL-HDIKLAFKKNISPKLTM 159


>UniRef50_A5KA36 Cluster: Putative uncharacterized protein; n=3;
            Plasmodium|Rep: Putative uncharacterized protein -
            Plasmodium vivax
          Length = 1832

 Score = 33.1 bits (72), Expect = 6.2
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = +1

Query: 358  KKTQPLYPHTISTESKKKNHCILKEGKSLYPDERINHCILKKRKH 492
            KK +  +PH      KK N  I K+     P  RIN CI KK+ H
Sbjct: 1060 KKIKNNFPHFFYLNGKKLNEAINKDNWVRIP-ARINQCIFKKKFH 1103


>UniRef50_Q5K6V0 Cluster: Putative uncharacterized protein; n=2;
           Filobasidiella neoformans|Rep: Putative uncharacterized
           protein - Cryptococcus neoformans (Filobasidiella
           neoformans)
          Length = 773

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +2

Query: 182 NPGPRIVSVYLKSSSPYLEENKRNPKSVQNQS 277
           +P PR+ +V  KS SPYL ++K NP + Q  S
Sbjct: 39  DPTPRLSNVLAKSKSPYLLQHKDNPVAWQEWS 70


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 659,319,967
Number of Sequences: 1657284
Number of extensions: 13552083
Number of successful extensions: 31570
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 30089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31510
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51239674196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)