Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060604.seq
         (669 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   3.0  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   5.2  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   5.2  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   5.2  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    21   6.9  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   6.9  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   6.9  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   6.9  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    21   6.9  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 212 LKSSSPYLEENKRNPKSVQNQSAPYYIHRILKEDSTTV 325
           L   SP  +++K+N KS   Q     +  +  +D TTV
Sbjct: 680 LPPESPTRDKSKQNEKSPSPQQRSPSVTDLSTKDGTTV 717


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 660 AATNIVARGLSIPVISD*GSARVNRKR 580
           AA  I+ +  S+P+++   ++RVN +R
Sbjct: 470 AAKCIIGKDYSLPMVNHAAASRVNIQR 496


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 279 RHTTSTVS*KKTQPLYPERRLNHRI 353
           RH  +T S ++T+PLY   ++  ++
Sbjct: 4   RHRFATGSPEETEPLYSSTQMPEKV 28


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 279 RHTTSTVS*KKTQPLYPERRLNHRI 353
           RH  +T S ++T+PLY   ++  ++
Sbjct: 4   RHRFATGSPEETEPLYSSTQMPEKV 28


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 418 CILKEGKSLYPDERINHCILKKRKHHCI 501
           C+L +GK     E++   I +  K+ C+
Sbjct: 44  CVLDKGKCTKEAEKLKKGITETMKNGCV 71


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 311 LLSGYGGCSMARTGSGQT 258
           +LSG    S A+TGSG+T
Sbjct: 192 ILSGRDLMSCAQTGSGKT 209


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 112 IRSYGGPTTVTRTDLGG 62
           + SYG   T+ R DLGG
Sbjct: 98  MNSYGSVGTLGRGDLGG 114


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 258 SLSRTSPRHTTSTVS*KKTQPLYP 329
           S S +SP+H++S+ S      +YP
Sbjct: 39  SPSGSSPQHSSSSASTSPAARMYP 62


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 258 SLSRTSPRHTTSTVS*KKTQPLYP 329
           S S +SP+H++S+ S      +YP
Sbjct: 39  SPSGSSPQHSSSSASTSPAARMYP 62


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,784
Number of Sequences: 336
Number of extensions: 3725
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)