Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060604.seq
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch...    29   0.61 
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   1.8  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    27   2.4  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    26   5.6  
SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces ...    26   5.6  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    26   5.6  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    25   7.5  
SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual    25   7.5  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    25   9.9  

>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
           Nak1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +3

Query: 9   ERSSLLQPLDLNGQVFSYPPKSVRVTVVGPP 101
           + S++LQPL++N  +   PPKS+  +++  P
Sbjct: 518 KHSAVLQPLEVNRSISIPPPKSISPSILHKP 548


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 369  LSLLSGYGG*VFFQDTVVESSFRIRWM*YGADWFWTDLGFLLFSS 235
            L  + GY    FF++   ++S R  W  +    FWT LGF + +S
Sbjct: 970  LDTIKGYSVLSFFRENH-KNSLRKSWEAFKRRAFWTSLGFAINNS 1013


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +2

Query: 233 LEENKRNPKSVQNQSAPYYIHRILKEDSTTVS*KKTQPPYPERRL---NHCIHILYP 394
           LEE  R    ++    P    ++L ED+ +V  K  + PY E+ +   +H I+I +P
Sbjct: 155 LEEKLRRKFGIEITEVPTPEVKMLDEDTLSVDGKIIKKPYVEKPVYGEDHNIYIYFP 211


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +1

Query: 58  PILLNQCA*LSSDLHNFVFHFLKST*RI 141
           P+ LN C  ++  + +F+  FL+ST ++
Sbjct: 490 PLNLNVCCCIAEPIQSFILSFLRSTYKV 517


>SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 227

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 432 FFQDTVIFLL*FSGYSMWIQWLSLLSGY 349
           F    ++FL+ F G+  W+   S+ S Y
Sbjct: 51  FIMAVMVFLVIFDGFPFWLSAFSIFSHY 78


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 191 PRIVSVYLKSSSPYLEENKRNPKSVQNQSAPYYIHRILKEDSTTV 325
           PR  ++YLK SS Y   +  NP   + Q     +H  LK    T+
Sbjct: 480 PRYKNLYLKVSSYYDNNDTNNPNLNKLQDELISLHSQLKSWKNTL 524


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 568 ASTRPFPVNPSRASIAYHRNAETSSYN 648
           A  RP+ + PSR+S A +   +T SYN
Sbjct: 490 AEDRPYEIEPSRSSFATN---DTGSYN 513


>SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 273

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 437 FPSFRIQXXXXFDSVDIVCGYSG 369
           +P F ++     + VDI CGY G
Sbjct: 71  YPDFDVESNKKVEIVDIGCGYGG 93


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
 Frame = +2

Query: 137 ESRYNILVAALRDPKNPGPRIVSV-YLKSSSPYLEENKRNPKSVQNQSAPYYIHRILKED 313
           +SR   L++ L D  +    +VS+ +LK +  Y   +  +P  ++  S PY++   LK +
Sbjct: 226 KSRMTGLLSHLEDILSE--ELVSITFLKDAVAYPIVSYCSPNPLRETSNPYFLRDFLKNN 283

Query: 314 -STTVS*KKTQPPYPER----RLNHCIHILYPLNQRRKITV 421
            +T+   +  Q  Y E     +L+ C+ + Y  +  R I +
Sbjct: 284 ANTSTLGQSEQLRYLEEALSLKLSDCLKMDYGRDSLRDIRI 324


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,758,691
Number of Sequences: 5004
Number of extensions: 59532
Number of successful extensions: 161
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)