Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060604.seq
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0030 - 21698625-21698752,21699589-21699627,21699708-216998...    29   3.3  
05_05_0034 - 21741148-21741275,21741890-21741928,21742007-217421...    28   7.7  

>05_05_0030 -
           21698625-21698752,21699589-21699627,21699708-21699822,
           21699927-21699992,21701064-21701203,21701424-21701473,
           21701608-21702045,21702757-21702839,21702941-21702977,
           21703366-21703457,21703531-21703615,21703950-21704029,
           21704049-21704105,21704350-21704747,21706322-21707223,
           21707331-21707421,21708123-21710273,21710375-21710813,
           21711180-21711299
          Length = 1836

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 215 KSSSPYLEENKRNPKSVQNQSAPYYIHRILKEDSTTV 325
           K    Y+ +N RNP S++  + P+  H I +E  TTV
Sbjct: 393 KPKRKYVRKN-RNPSSLEKCAEPFSDHSISRESRTTV 428


>05_05_0034 -
           21741148-21741275,21741890-21741928,21742007-21742121,
           21742227-21742292,21743213-21743371,21743573-21743609,
           21743757-21744194,21744735-21744817,21744920-21744956,
           21745146-21745214,21745316-21745407,21745481-21745565,
           21745903-21745982,21746327-21746724,21746813-21747717,
           21747825-21747915,21748617-21750680,21750681-21750749,
           21750850-21751273,21751644-21751763
          Length = 1832

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 215 KSSSPYLEENKRNPKSVQNQSAPYYIHRILKEDSTTV 325
           K    Y+ +N RNP S++  + P+  H I +E  TTV
Sbjct: 388 KPKRKYVWKN-RNPSSLEKCAEPFSDHSISRESRTTV 423


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,631,648
Number of Sequences: 37544
Number of extensions: 372676
Number of successful extensions: 778
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)