Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060604.seq
(669 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.85
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_33177| Best HMM Match : Beach (HMM E-Value=0) 30 2.0
SB_7691| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_11329| Best HMM Match : DUF1151 (HMM E-Value=0.0015) 29 3.4
SB_9409| Best HMM Match : HLH (HMM E-Value=5.8e-17) 29 3.4
SB_3456| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_58647| Best HMM Match : Galactosyl_T (HMM E-Value=0.01) 28 6.0
SB_30875| Best HMM Match : Rubredoxin (HMM E-Value=1.6) 28 6.0
SB_51400| Best HMM Match : Kinesin (HMM E-Value=0) 28 6.0
SB_39336| Best HMM Match : Kinesin (HMM E-Value=0) 28 6.0
SB_39317| Best HMM Match : Protamine_P2 (HMM E-Value=3.4) 28 6.0
SB_2181| Best HMM Match : RGS (HMM E-Value=0.11) 28 6.0
SB_40057| Best HMM Match : zf-B_box (HMM E-Value=1.4e-08) 25 8.8
>SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 942
Score = 31.1 bits (67), Expect = 0.85
Identities = 15/61 (24%), Positives = 26/61 (42%)
Frame = +1
Query: 400 SKKKNHCILKEGKSLYPDERINHCILKKRKHHCILKENSSYPEXXXXXXXXXPKNQASTR 579
S+ ++ + ++GKSL +E++ H K +HH + E NQ T
Sbjct: 412 SRSEDKSLKEKGKSLSLEEKLRHIAEDKNEHHTATDTKEAQEEAPVSDNGDSSSNQQQTS 471
Query: 580 P 582
P
Sbjct: 472 P 472
>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2537
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +2
Query: 131 RSESRYNILVAALRDPKNPGPRIVSVYLKSSSPYLEENKRNPKSVQNQSAPYYI 292
R + YNIL A PKNPG V L S + + E + NQ P ++
Sbjct: 1178 RLVTTYNILGKAGYQPKNPGTNRALVSLLSENIFASEKDTGDDTFLNQQEPSHM 1231
>SB_33177| Best HMM Match : Beach (HMM E-Value=0)
Length = 446
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 284 YYIHRILKEDSTTVS*KKTQPPYPERRLNHCIHILYPLNQR 406
YY+ R+ ED + + + PY RLNH I +++ QR
Sbjct: 133 YYLVRVDCEDFIRKNREALECPYVSERLNHWIDLIFGYKQR 173
>SB_7691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +2
Query: 212 LKSSSPYLEENKRNPKSVQNQSAPYYIHRILKEDSTTVS*KKTQ 343
L+ S P LE+N+R PK + A ++H+++ E+ + K+ +
Sbjct: 258 LRDSIPELEDNERAPKVAILKKAREFVHQLIGEEERLCADKELE 301
>SB_11329| Best HMM Match : DUF1151 (HMM E-Value=0.0015)
Length = 746
Score = 29.1 bits (62), Expect = 3.4
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Frame = +3
Query: 216 KAHRRILKKTKEIL-SLSRTSPRHTTSTVS*KKTQPLYPERRLNHRILKEDSTTVSTYYI 392
K+HR KK+ I S R + +S KK+ + R+ +HRI ++ S +S
Sbjct: 91 KSHRISRKKSHRISRKKSHRISREKSHRISRKKSHRI--SRKKSHRISRKKSHRISRKKS 148
Query: 393 H*IKEEKSLYPERRKITVS*RKNQPLYPEKK 485
H I +KS R+K RK KK
Sbjct: 149 HRISRKKSHRISRKKSHRISRKKSHRISRKK 179
Score = 28.7 bits (61), Expect = 4.5
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Frame = +3
Query: 216 KAHRRILKKTKEIL-SLSRTSPRHTTSTVS*KKTQPLYPERRLNHRILKEDSTTVSTYYI 392
K+HR KK+ I S R + +S KK+ + R+ +HRI ++ S +S
Sbjct: 99 KSHRISRKKSHRISREKSHRISRKKSHRISRKKSHRI--SRKKSHRISRKKSHRISRKKS 156
Query: 393 H*IKEEKSLYPERRKITVS*RKNQPLYPEKK 485
H I +KS R+K RK KK
Sbjct: 157 HRISRKKSHRISRKKSHRISRKKSHRISRKK 187
>SB_9409| Best HMM Match : HLH (HMM E-Value=5.8e-17)
Length = 362
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +2
Query: 212 LKSSSPYLEENKRNPKSVQNQSAPYYIHRILKEDST 319
L++ P LEEN+R+PK + A Y+ + LKE+ T
Sbjct: 302 LRAEVPELEENERSPKVTILRKARDYVEQ-LKEEET 336
>SB_3456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 462
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = -2
Query: 269 SGQT*DFFCFLQDTAMSFSSRRRRSEDPGFLDPLTLPPKCYSGIRYVDFKK*NTKLWRSD 90
S T DF + + + R + ED GFL P+ Y G+ Y+ + + ++ R
Sbjct: 14 SRNTIDFISQRKPQKANANERVKSKEDAGFLSKRQFIPRIYGGVPYLQQQFNDEQIERPG 73
Query: 89 DSHA 78
D A
Sbjct: 74 DEDA 77
>SB_58647| Best HMM Match : Galactosyl_T (HMM E-Value=0.01)
Length = 374
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 267 WTDLGFLLFSSRYGDELFK*TETIR 193
WTD G ++F + DEL K ET++
Sbjct: 212 WTDEGLIIFGRDFVDELVKLNETLQ 236
>SB_30875| Best HMM Match : Rubredoxin (HMM E-Value=1.6)
Length = 1130
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +2
Query: 215 KSSSPYLEENKRNPKSVQNQSAPYYIHRILKEDSTTVS*KKTQPPYPERRLNHCIHI 385
KSS E NKR KS+ ++ P IH K+ + T S KK + +++ + +H+
Sbjct: 676 KSSGEKGEGNKRQSKSIISKLRPGSIHGKEKKKTDTDSDKKFRRKSSKQKKDVVLHV 732
>SB_51400| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 455
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -2
Query: 356 QDTVVESSFRIQWLSLLSGYGGCSMA--RTGSGQT 258
Q+TV E R S L GY G MA +TGSG+T
Sbjct: 66 QETVYEECARKLVTSTLDGYNGTVMAYGQTGSGKT 100
>SB_39336| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 558
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -2
Query: 356 QDTVVESSFRIQWLSLLSGYGGCSMA--RTGSGQT 258
Q+TV E R S L GY G MA +TGSG+T
Sbjct: 66 QETVYEECARKLVTSTLDGYNGTVMAYGQTGSGKT 100
>SB_39317| Best HMM Match : Protamine_P2 (HMM E-Value=3.4)
Length = 269
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 436 KSLYPDERINHCILKKRKHHCILKE 510
K+L+P R CI + RK H I+KE
Sbjct: 162 KTLFPAMRFKRCIRRLRKGHRIVKE 186
>SB_2181| Best HMM Match : RGS (HMM E-Value=0.11)
Length = 1313
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/50 (24%), Positives = 23/50 (46%)
Frame = +1
Query: 358 KKTQPLYPHTISTESKKKNHCILKEGKSLYPDERINHCILKKRKHHCILK 507
K+ +P Y HC+L+ + L DE ++ ++ K + C L+
Sbjct: 809 KQLEPAYEELFDAVEDHALHCLLEPWQMLQKDEEKDYVVITKEQKLCHLE 858
>SB_40057| Best HMM Match : zf-B_box (HMM E-Value=1.4e-08)
Length = 584
Score = 24.6 bits (51), Expect(2) = 8.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 424 LKEGKSLYPDERINHCILKKRKHHCILK 507
+K GK +PD + + +LK R+ H ILK
Sbjct: 458 VKPGKD-FPDFKNSRDLLKDREEHIILK 484
Score = 21.4 bits (43), Expect(2) = 8.8
Identities = 7/29 (24%), Positives = 17/29 (58%)
Frame = +1
Query: 361 KTQPLYPHTISTESKKKNHCILKEGKSLY 447
K++ YP T ++++ + + +GK +Y
Sbjct: 398 KSKSHYPETTPEQNEENSIFVSSDGKGIY 426
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,289,954
Number of Sequences: 59808
Number of extensions: 445355
Number of successful extensions: 982
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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