Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060604.seq
         (669 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10990-7|AAB59174.1|  378|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AL132943-6|CAC14393.1|  511|Caenorhabditis elegans Hypothetical ...    29   2.3  
U41275-2|AAA82465.1|  438|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AF098986-5|AAC67426.1|  671|Caenorhabditis elegans Hypothetical ...    29   3.0  
Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical p...    28   6.9  
Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myos...    28   6.9  
AF002197-6|AAD34661.1|  446|Caenorhabditis elegans Hypothetical ...    28   6.9  

>L10990-7|AAB59174.1|  378|Caenorhabditis elegans Hypothetical
           protein C30A5.4 protein.
          Length = 378

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +1

Query: 322 CILKEDSTTVS*KKTQPLYPHTISTESKKKNHCILKEGKSLYPDERINHCILKK 483
           CI+KE S+  S  KTQP    TIS     K   + K+   +     I + + KK
Sbjct: 24  CIIKEKSSVRSMAKTQPTSGRTISLSEINKPIALSKKNTEIKAAVEIQNRLTKK 77


>AL132943-6|CAC14393.1|  511|Caenorhabditis elegans Hypothetical
           protein Y116F11B.11 protein.
          Length = 511

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = +2

Query: 464 TTVS*KKENITVS*KKIHRIPKEEFIIIITFRKIKHQPGRFL 589
           T +S   EN+  S +K+H++P +E  + I F+K++    +FL
Sbjct: 253 TEISNLIENVN-SVQKLHQMPTKEMAVFICFQKLEKDSEKFL 293


>U41275-2|AAA82465.1|  438|Caenorhabditis elegans Hypothetical
           protein T25D1.2 protein.
          Length = 438

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 251 FFCFLQDTAMSFSSRRRRSEDPGF 180
           FFC    T   F  R+RR E PG+
Sbjct: 365 FFCMSPGTLYKFGDRKRREERPGY 388


>AF098986-5|AAC67426.1|  671|Caenorhabditis elegans Hypothetical
           protein C36C9.4 protein.
          Length = 671

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 251 FFCFLQDTAMSFSSRRRRSEDPGF 180
           FFC    T   F  R+RR E PG+
Sbjct: 293 FFCMSPGTLYKFGDRKRREERPGY 316


>Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical
           protein F58E10.3a protein.
          Length = 561

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 21/62 (33%), Positives = 32/62 (51%)
 Frame = -2

Query: 362 FFQDTVVESSFRIQWLSLLSGYGGCSMARTGSGQT*DFFCFLQDTAMSFSSRRRRSEDPG 183
           F + TV++S   I W   +SG    S+A+TGSG+T  F        ++  + R+R E P 
Sbjct: 149 FQKPTVIQS---ISWPIAMSGRDIISIAKTGSGKTLAFM-LPALVHITKQAHRQRGEGPA 204

Query: 182 FL 177
            L
Sbjct: 205 VL 206


>Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical
            protein F20G4.3 protein.
          Length = 2003

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/42 (40%), Positives = 27/42 (64%)
 Frame = -1

Query: 141  DSLRRF*KMKYEVMEVRRQSRALI*EDRRRLDRSGREVVEDL 16
            D+L    K++ EV EV+    +L+ E R++LD   REV+E+L
Sbjct: 1364 DALDAQEKIEKEVKEVK----SLLAEARKKLDEENREVMEEL 1401


>Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical protein
            F20G4.3 protein.
          Length = 2003

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/42 (40%), Positives = 27/42 (64%)
 Frame = -1

Query: 141  DSLRRF*KMKYEVMEVRRQSRALI*EDRRRLDRSGREVVEDL 16
            D+L    K++ EV EV+    +L+ E R++LD   REV+E+L
Sbjct: 1364 DALDAQEKIEKEVKEVK----SLLAEARKKLDEENREVMEEL 1401


>U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myosin
            heavy chain II protein.
          Length = 2003

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/42 (40%), Positives = 27/42 (64%)
 Frame = -1

Query: 141  DSLRRF*KMKYEVMEVRRQSRALI*EDRRRLDRSGREVVEDL 16
            D+L    K++ EV EV+    +L+ E R++LD   REV+E+L
Sbjct: 1364 DALDAQEKIEKEVKEVK----SLLAEARKKLDEENREVMEEL 1401


>AF002197-6|AAD34661.1|  446|Caenorhabditis elegans Hypothetical
           protein F20H11.4 protein.
          Length = 446

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 155 LVAALRDPKNPGPRIV 202
           L+ ALRDPK PGP ++
Sbjct: 300 LLKALRDPKRPGPPVI 315


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,194,594
Number of Sequences: 27780
Number of extensions: 330071
Number of successful extensions: 839
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)