Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060604.seq
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           26   0.28 
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           26   0.28 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.1  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    21   8.0  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   8.0  

>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 143 RYNILVAALR-DPKNPGPRIVSVYLKSSSPYLEENKR 250
           RYN  +     + K PGP+ + VYL+ S P+ E+N +
Sbjct: 57  RYNFQLKPYNPEHKPPGPKDL-VYLEPSPPFCEKNPK 92


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 143 RYNILVAALR-DPKNPGPRIVSVYLKSSSPYLEENKR 250
           RYN  +     + K PGP+ + VYL+ S P+ E+N +
Sbjct: 58  RYNFQLKPYNPEHKPPGPKDL-VYLEPSPPFCEKNPK 93


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 660 AATNIVARGLSIPVISD*GSARVNRKR 580
           AA  I+ +  S+P+++   S+R+N +R
Sbjct: 474 AAKCIIGKDYSLPMVNHSKSSRINIER 500


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +1

Query: 403 KKKNHCILKEGKSLYPDERINHCILKKRKHHC 498
           +K+ HCIL  G      ++I   + +   +HC
Sbjct: 34  QKQLHCILDRGHCDVIGKKIKELLPEVLNNHC 65


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -1

Query: 279 ADWFWTDLGFL 247
           A W W D GFL
Sbjct: 163 AGWIWGDQGFL 173


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,213
Number of Sequences: 438
Number of extensions: 3940
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)