Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060604.seq
         (669 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03730.2 68418.m00334 serine/threonine protein kinase (CTR1) ...    29   3.7  
At5g03730.1 68418.m00333 serine/threonine protein kinase (CTR1) ...    29   3.7  
At5g38560.1 68418.m04662 protein kinase family protein contains ...    27   8.5  
At3g19260.1 68416.m02443 longevity-assurance (LAG1) family prote...    27   8.5  
At1g62305.2 68414.m07030 expressed protein contains Pfam profile...    27   8.5  
At1g62305.1 68414.m07029 expressed protein contains Pfam profile...    27   8.5  

>At5g03730.2 68418.m00334 serine/threonine protein kinase (CTR1)
           identical to serine/threonine-protein kinase CTR1
           [Arabidopsis thaliana] SWISS-PROT:Q05609
          Length = 821

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 296 GGCSMARTGSGQT*DFFCFLQDTAMSFSSRRRRSEDPGFLDPL 168
           GG S  ++ + QT + +      A+  SS    ++DP FLDP+
Sbjct: 153 GGSSSGKSWAQQTEESYQLQLALALRLSSEATCADDPNFLDPV 195


>At5g03730.1 68418.m00333 serine/threonine protein kinase (CTR1)
           identical to serine/threonine-protein kinase CTR1
           [Arabidopsis thaliana] SWISS-PROT:Q05609
          Length = 821

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 296 GGCSMARTGSGQT*DFFCFLQDTAMSFSSRRRRSEDPGFLDPL 168
           GG S  ++ + QT + +      A+  SS    ++DP FLDP+
Sbjct: 153 GGSSSGKSWAQQTEESYQLQLALALRLSSEATCADDPNFLDPV 195


>At5g38560.1 68418.m04662 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 681

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 212 SRRRRSEDPGFLDPLTLPPKCYS 144
           +R+R+ +DPG     T+PP  YS
Sbjct: 260 TRKRKRKDPGTFVGYTMPPSAYS 282


>At3g19260.1 68416.m02443 longevity-assurance (LAG1) family protein
           similar to Alternaria stem canker resistance protein
           (ASC1) [Lycopersicon esculentum] GI:7688742; contains
           Pfam profile PF03798: Longevity-assurance protein (LAG1)
          Length = 296

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = -2

Query: 521 YDEFSFRIQ*CFLFFRIQWLILSSGYSDFPSFRIQXXXXFDSVDI 387
           Y E  F    CF  F + WL+L   Y  F   R       D +D+
Sbjct: 195 YSEKEFGASVCFALFAVSWLLLRLIYFPFWIIRATSIELLDYLDM 239


>At1g62305.2 68414.m07030 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 354

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 436 KSLYPDERINHCILKKRKHHCILKEN 513
           +SL  D R N   LKKR+H+CI  E+
Sbjct: 218 RSLPLDPRKNWLYLKKRRHNCIPDEH 243


>At1g62305.1 68414.m07029 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 378

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 436 KSLYPDERINHCILKKRKHHCILKEN 513
           +SL  D R N   LKKR+H+CI  E+
Sbjct: 242 RSLPLDPRKNWLYLKKRRHNCIPDEH 267


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,405,357
Number of Sequences: 28952
Number of extensions: 314483
Number of successful extensions: 790
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)