BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV060604.seq (669 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g03730.2 68418.m00334 serine/threonine protein kinase (CTR1) ... 29 3.7 At5g03730.1 68418.m00333 serine/threonine protein kinase (CTR1) ... 29 3.7 At5g38560.1 68418.m04662 protein kinase family protein contains ... 27 8.5 At3g19260.1 68416.m02443 longevity-assurance (LAG1) family prote... 27 8.5 At1g62305.2 68414.m07030 expressed protein contains Pfam profile... 27 8.5 At1g62305.1 68414.m07029 expressed protein contains Pfam profile... 27 8.5 >At5g03730.2 68418.m00334 serine/threonine protein kinase (CTR1) identical to serine/threonine-protein kinase CTR1 [Arabidopsis thaliana] SWISS-PROT:Q05609 Length = 821 Score = 28.7 bits (61), Expect = 3.7 Identities = 14/43 (32%), Positives = 23/43 (53%) Frame = -2 Query: 296 GGCSMARTGSGQT*DFFCFLQDTAMSFSSRRRRSEDPGFLDPL 168 GG S ++ + QT + + A+ SS ++DP FLDP+ Sbjct: 153 GGSSSGKSWAQQTEESYQLQLALALRLSSEATCADDPNFLDPV 195 >At5g03730.1 68418.m00333 serine/threonine protein kinase (CTR1) identical to serine/threonine-protein kinase CTR1 [Arabidopsis thaliana] SWISS-PROT:Q05609 Length = 821 Score = 28.7 bits (61), Expect = 3.7 Identities = 14/43 (32%), Positives = 23/43 (53%) Frame = -2 Query: 296 GGCSMARTGSGQT*DFFCFLQDTAMSFSSRRRRSEDPGFLDPL 168 GG S ++ + QT + + A+ SS ++DP FLDP+ Sbjct: 153 GGSSSGKSWAQQTEESYQLQLALALRLSSEATCADDPNFLDPV 195 >At5g38560.1 68418.m04662 protein kinase family protein contains protein kinase domain, Pfam:PF00069 Length = 681 Score = 27.5 bits (58), Expect = 8.5 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = -2 Query: 212 SRRRRSEDPGFLDPLTLPPKCYS 144 +R+R+ +DPG T+PP YS Sbjct: 260 TRKRKRKDPGTFVGYTMPPSAYS 282 >At3g19260.1 68416.m02443 longevity-assurance (LAG1) family protein similar to Alternaria stem canker resistance protein (ASC1) [Lycopersicon esculentum] GI:7688742; contains Pfam profile PF03798: Longevity-assurance protein (LAG1) Length = 296 Score = 27.5 bits (58), Expect = 8.5 Identities = 14/45 (31%), Positives = 18/45 (40%) Frame = -2 Query: 521 YDEFSFRIQ*CFLFFRIQWLILSSGYSDFPSFRIQXXXXFDSVDI 387 Y E F CF F + WL+L Y F R D +D+ Sbjct: 195 YSEKEFGASVCFALFAVSWLLLRLIYFPFWIIRATSIELLDYLDM 239 >At1g62305.2 68414.m07030 expressed protein contains Pfam profile PF03267: Arabidopsis protein of unknown function, DUF266 Length = 354 Score = 27.5 bits (58), Expect = 8.5 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = +1 Query: 436 KSLYPDERINHCILKKRKHHCILKEN 513 +SL D R N LKKR+H+CI E+ Sbjct: 218 RSLPLDPRKNWLYLKKRRHNCIPDEH 243 >At1g62305.1 68414.m07029 expressed protein contains Pfam profile PF03267: Arabidopsis protein of unknown function, DUF266 Length = 378 Score = 27.5 bits (58), Expect = 8.5 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = +1 Query: 436 KSLYPDERINHCILKKRKHHCILKEN 513 +SL D R N LKKR+H+CI E+ Sbjct: 242 RSLPLDPRKNWLYLKKRRHNCIPDEH 267 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,405,357 Number of Sequences: 28952 Number of extensions: 314483 Number of successful extensions: 790 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 748 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 788 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1412971776 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -