Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060603.seq
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    35   6e-04
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    35   6e-04
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          25   0.89 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   3.6  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   6.3  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   6.3  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   6.3  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 35.1 bits (77), Expect = 6e-04
 Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
 Frame = +2

Query: 260 LSCGLSHTAVVPLDLVKCRLQV--------DAEKYKNVVNGFKVSVREEGVRGLAKGWAP 415
           ++  +S T V P++ VK  LQV        + ++YK +++ F    +E+G     +G   
Sbjct: 19  VAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLA 78

Query: 416 TXIGYSMQGLCKFGFYEVFKVAYAGMLDDETPTL 517
             I Y       F F + +K  + G +D  T  L
Sbjct: 79  NVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFL 112


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 35.1 bits (77), Expect = 6e-04
 Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
 Frame = +2

Query: 260 LSCGLSHTAVVPLDLVKCRLQV--------DAEKYKNVVNGFKVSVREEGVRGLAKGWAP 415
           ++  +S T V P++ VK  LQV        + ++YK +++ F    +E+G     +G   
Sbjct: 19  VAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLA 78

Query: 416 TXIGYSMQGLCKFGFYEVFKVAYAGMLDDETPTL 517
             I Y       F F + +K  + G +D  T  L
Sbjct: 79  NVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFL 112


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = -2

Query: 317 DDTSPGRGAPRPCGRDRMTEHTNSAKSEIFRRSKFTGLRGYRSRRRHA 174
           D  S      R C RDR  E+    + +     +   LR   SRRR++
Sbjct: 241 DRNSYRNDGERSCSRDRSREYKKDRRYDQLHNVEEKHLRERTSRRRYS 288


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -3

Query: 307 HQVEGHHGRVGETA*QNTPTPQRAKYLGDP 218
           HQ + H+G   +   Q     Q+++  GDP
Sbjct: 22  HQHQQHYGAAVQVPQQTQSVQQQSQQAGDP 51


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -2

Query: 287 RPCGRDRMTEHTNSAKSEIFRRSKFTGLRGYRSRRRHA 174
           R C RDR  E+    + E     K   L    +R+R++
Sbjct: 2   RSCSRDRNREYRKDRRYEKLHNEKEKLLEERTNRKRNS 39


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -2

Query: 287 RPCGRDRMTEHTNSAKSEIFRRSKFTGLRGYRSRRRHA 174
           R C RDR  E+    + E     K   L    +R+R++
Sbjct: 2   RSCSRDRNREYRKDRRYEKLHNEKEKLLEERTNRKRNS 39


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 115 GPRNGEFRAASSNEEN 68
           GPRNG+ +  SS  EN
Sbjct: 210 GPRNGKRKRKSSTIEN 225


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,292
Number of Sequences: 438
Number of extensions: 4258
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)