Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060602.seq
         (681 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g04020.2 68414.m00389 zinc finger (C3HC4-type RING finger) fa...    27   8.7  
At1g04020.1 68414.m00388 zinc finger (C3HC4-type RING finger) fa...    27   8.7  
At1g03110.1 68414.m00288 transducin family protein / WD-40 repea...    27   8.7  

>At1g04020.2 68414.m00389 zinc finger (C3HC4-type RING finger)
           family protein / BRCT domain-containing protein contains
           Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
          Length = 713

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 545 TLVLINNWLLHLSRPHXNSK*PVCL 619
           T +L+N W+LHL +     K P+CL
Sbjct: 5   TNMLMNPWVLHLQKLELELKCPLCL 29


>At1g04020.1 68414.m00388 zinc finger (C3HC4-type RING finger)
           family protein / BRCT domain-containing protein contains
           Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
          Length = 714

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 545 TLVLINNWLLHLSRPHXNSK*PVCL 619
           T +L+N W+LHL +     K P+CL
Sbjct: 5   TNMLMNPWVLHLQKLELELKCPLCL 29


>At1g03110.1 68414.m00288 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to WD-repeat domain 4 protein (GI:9955698) [Mus
           musculus]
          Length = 427

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 407 CVVIMSLTTTPDGRYIL 457
           C +I SL  +PDGRYIL
Sbjct: 155 CSIITSLEFSPDGRYIL 171


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,260,557
Number of Sequences: 28952
Number of extensions: 207456
Number of successful extensions: 366
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)