Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060601.seq
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi...    58   9e-10
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac...    41   2e-04
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    32   0.089
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    31   0.20 
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    29   0.47 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.1  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   1.9  
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.3  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    26   5.8  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   7.7  
SPCC1259.06 |||transcription factor TFIID complex subunit 8 |Sch...    25   7.7  
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    25   7.7  

>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 58.4 bits (135), Expect = 9e-10
 Identities = 31/87 (35%), Positives = 48/87 (55%)
 Frame = +2

Query: 248 QRVLDAGVKLKVVGRAGAGVDNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARX 427
           +RVL+A   L V+G    G + +D+D A ++G+ V N+P AN+ S  EL    ++ LAR 
Sbjct: 111 RRVLEAADSLIVIGCFCIGTNQVDLDFAAERGIAVFNSPYANSRSVAELVIGYIISLARQ 170

Query: 428 VVPATTALKAGRWDRALYTGSELAGKT 508
           V   +  L  G W++      E+ GKT
Sbjct: 171 VGDRSLELHRGEWNKVSSGCWEIRGKT 197


>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 340

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 25/78 (32%), Positives = 35/78 (44%)
 Frame = +2

Query: 272 KLKVVGRAGAGVDNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARXVVPATTAL 451
           KL V G   AG +N+DVD A + GV V N P         +   L +   R    A  +L
Sbjct: 85  KLFVTG--AAGYNNVDVDWATRNGVYVANTPNGPTEGTANMNLMLFMCTLRGAREAEQSL 142

Query: 452 KAGRWDRALYTGSELAGK 505
           + G+W + L    +  GK
Sbjct: 143 RLGKWRQNLSLTDDPYGK 160


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 31.9 bits (69), Expect = 0.089
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -1

Query: 498 ASSLPVYRARSHLPAFSAVVAGTTXRARTNINVQVSS-HALSALAPGALITPTPFLPAES 322
           +SSLP   + S  P+ S++   T+  +    +V  SS H +    P  L  P+ F+ A+ 
Sbjct: 116 SSSLPSIPSSSSTPSISSIPHTTSSVSNDIPSVLGSSDHPIDLDNPEHLTPPSSFITAKQ 175

Query: 321 TSMLSTPAP 295
            S L TP P
Sbjct: 176 LSRLPTPLP 184


>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
 Frame = +2

Query: 245 DQRVLD-AGVKLKVVGRAGAGVDNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLA 421
           D+ ++D     +K +   GAG + +DV +   +G+ V + P A   +  ++   LML   
Sbjct: 70  DKEIIDNLPPSVKFICHLGAGYETVDVAACTARGIQVSHVPKAVDDATADVGIFLMLGAL 129

Query: 422 RXVVPATTALKAGRWDRALYTGSELAGKT 508
           R        L    W+       +  GKT
Sbjct: 130 RGFNQGIFELHKNNWNANCKPSHDPEGKT 158


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -1

Query: 414 TNINVQVSSHALSALAPGALITPTPFLPAES-TSMLSTPAPARPTTFSFTPASNTLW 247
           T+IN  V+S +L++ + G     T  L A S  S+ S   P++P T  F    N +W
Sbjct: 275 TSINANVTS-SLTSNSTGKTSKTTDLLIAASKKSLPSNSTPSKPNTSFFETPHNNIW 330


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 363 GALITP-TPFLPAESTSMLSTPAPARPTTFSFTPASNTL 250
           G   TP TP +P  STS  STP P   T+ + T +S  L
Sbjct: 349 GNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLL 387



 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 363 GALITP-TPFLPAESTSMLSTPAPARPTTFSFTPAS 259
           G   TP TP +P  STS  STP P   T+ + T +S
Sbjct: 295 GNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSS 330



 Score = 25.8 bits (54), Expect = 5.8
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = -1

Query: 498 ASSLPVYRARSHLPAFSAVVAGTTXRARTNINVQVSSHALSALAPGALITP-TPFLPAES 322
           AS+  +  + S   + S   + ++    T+ +   S+         +L TP TP +P  S
Sbjct: 83  ASTPIITESTSSTSSASTTGSSSSPLPSTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTS 142

Query: 321 TSMLSTPAPARPTTFSFTPASN 256
           TS  S P P  PT+ S T  ++
Sbjct: 143 TSSTSIPIP--PTSTSSTDTNS 162



 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 360 ALITP-TPFLPAESTSMLSTPAPARPTTFSFTPAS 259
           +L TP TP +P  STS  S P P   T+ + T +S
Sbjct: 186 SLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSS 220



 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 360 ALITP-TPFLPAESTSMLSTPAPARPTTFSFTPAS 259
           +L TP TP +P  STS  S P P   T+ + T +S
Sbjct: 242 SLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSS 276



 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = -1

Query: 441 VAGTTXRARTNINVQVSSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTTFS-FTP 265
           ++ +T    T +     + + S L     +T TP      T+  S P  + P T S +T 
Sbjct: 516 ISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTI 575

Query: 264 ASNT 253
           +S+T
Sbjct: 576 SSST 579


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 19/71 (26%), Positives = 40/71 (56%)
 Frame = -1

Query: 456 AFSAVVAGTTXRARTNINVQVSSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTTF 277
           A S+V   ++   +   +  +SS + SA +P + ++ +  + +E +S L + + A P+T 
Sbjct: 464 ASSSVSVPSSSSVQPQSSTPISSSS-SASSPQSTLSTSSEVVSEVSSTLLSGSSAIPSTS 522

Query: 276 SFTPASNTLWS 244
           S TP+S+ + S
Sbjct: 523 SSTPSSSIISS 533


>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = -1

Query: 444 VVAGTTXRA-RTNINVQVSSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTTFSFT 268
           VV G T R    + +V ++   LS + P +L        + S+S +ST   ++P+T S +
Sbjct: 19  VVDGATPRTFAPSASVSINYGTLSTVFP-SLYRRASTSSSSSSSSISTSHDSQPSTSSSS 77

Query: 267 PASNT 253
           P+S +
Sbjct: 78  PSSTS 82


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +1

Query: 514 ILGPWQGRAARWTLGCTPFGMKHHRISTLSCLLISAPV 627
           I G W   A  W LG   + +K H+ S  + L +   +
Sbjct: 113 ITGSWDSTARVWALGQCKYVLKGHQSSVWAVLALGEDI 150


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 384 ALSALAPGALITPTPFLPAESTSMLSTPAPARPTTFSFTP 265
           ++SAL+  + + PT    + S    S PAP  P + S +P
Sbjct: 229 SVSALSSSSHLQPTSATSSSSRLYPSRPAPTPPASSSSSP 268


>SPCC1259.06 |||transcription factor TFIID complex subunit 8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 222

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 396 VSSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTT 280
           + S A+S   P  ++   P  PA  T M +   P RPT+
Sbjct: 117 LGSLAVSQNRPAYVVNHLPPFPASHTYMATPVYPVRPTS 155


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 333 PAESTSMLSTPAPARPTTFSFTPASNT 253
           P+  ++   +PAP    T S +PA+NT
Sbjct: 125 PSSISNSSESPAPINSATASMSPANNT 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,588,551
Number of Sequences: 5004
Number of extensions: 47920
Number of successful extensions: 178
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)