Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060600.seq
         (682 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   3.1  
AM269505-4|CAK30051.1|   23|Tribolium castaneum mlpt peptide 4 p...    22   5.3  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   7.1  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 23/90 (25%), Positives = 42/90 (46%)
 Frame = +2

Query: 362 RKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKEITTGTLQKWP 541
           R++Q   + +V+ E ++ +   DV+ ++DK L     NP+  +  L++ +I    L+   
Sbjct: 350 RQEQETLKSQVQRESDVVDSLKDVIEIVDKLL-----NPDLGLSLLQVAQIFKNLLENHY 404

Query: 542 QEKPDILL*RIHRKHTKMLLKSARRKCSPL 631
           +E     L  +       LL SA    SPL
Sbjct: 405 EEFVRYELGELAPGLVGPLLTSALASWSPL 434


>AM269505-4|CAK30051.1|   23|Tribolium castaneum mlpt peptide 4
           protein.
          Length = 23

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 209 GGRDEGSDGNRRR 247
           GGR E S G RRR
Sbjct: 9   GGRPETSSGRRRR 21


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 304 PTVIMACHFLN 336
           P VI+ACH L+
Sbjct: 169 PNVILACHMLS 179


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,117
Number of Sequences: 336
Number of extensions: 3241
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)