Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060600.seq
(682 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 122 4e-29
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 119 4e-28
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 29 0.62
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 27 1.9
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom... 27 1.9
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 27 1.9
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 27 2.5
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 27 2.5
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom... 27 2.5
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 27 3.3
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 26 4.4
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 26 5.8
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 25 7.7
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 25 7.7
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 122 bits (295), Expect = 4e-29
Identities = 58/86 (67%), Positives = 71/86 (82%), Gaps = 2/86 (2%)
Frame = +2
Query: 257 EERNLLSVAYKNVVGARRSSWRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYD 430
EERNLLSVAYKN++GARR+SWR+ISSIEQK E G+ R+ + KEYR K+E EL +IC+D
Sbjct: 41 EERNLLSVAYKNIIGARRASWRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHD 100
Query: 431 VLGLLDKHLIPKASNPESKVFYLKMK 508
VL +L+KHLIP A+ ESKVFY KMK
Sbjct: 101 VLSVLEKHLIPAATTGESKVFYYKMK 126
Score = 44.0 bits (99), Expect = 2e-05
Identities = 20/47 (42%), Positives = 27/47 (57%)
Frame = +1
Query: 511 DYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTSPQHTHL 651
DYYRYLAE GE + S +AY+ A +I+ A++ PT P L
Sbjct: 128 DYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPMRLGL 174
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/39 (53%), Positives = 26/39 (66%)
Frame = +3
Query: 138 MSVDREELVQRAKLAEQAERYDDMAAAMKEVTETGVELS 254
MS RE V AKLAEQAERY++M MK+V + +LS
Sbjct: 1 MSNSRENSVYLAKLAEQAERYEEMVENMKKVACSNDKLS 39
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 119 bits (286), Expect = 4e-28
Identities = 56/86 (65%), Positives = 71/86 (82%), Gaps = 2/86 (2%)
Frame = +2
Query: 257 EERNLLSVAYKNVVGARRSSWRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYD 430
EERNLLSVAYKNV+GARR+SWR++SSIEQK E G+ + ++ KEYR K+E+EL IC D
Sbjct: 42 EERNLLSVAYKNVIGARRASWRIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQD 101
Query: 431 VLGLLDKHLIPKASNPESKVFYLKMK 508
+L +L+KHLIP A++ ESKVFY KMK
Sbjct: 102 ILTVLEKHLIPNAASAESKVFYYKMK 127
Score = 46.8 bits (106), Expect = 3e-06
Identities = 21/42 (50%), Positives = 27/42 (64%)
Frame = +1
Query: 511 DYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTSP 636
DYYRYLAE A GE R + S + Y+ A EI+ A++ PT P
Sbjct: 129 DYYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHP 170
Score = 40.3 bits (90), Expect = 3e-04
Identities = 20/38 (52%), Positives = 24/38 (63%)
Frame = +3
Query: 141 SVDREELVQRAKLAEQAERYDDMAAAMKEVTETGVELS 254
+ RE+ V AKLAEQAERY+ M MK V T EL+
Sbjct: 3 TTSREDAVYLAKLAEQAERYEGMVENMKSVASTDQELT 40
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 29.1 bits (62), Expect = 0.62
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +2
Query: 344 KTEGSERKQQMAKEYRVKVEKELREI-CYDVLGLLDKHLIPKASNPESKVFYLKMKEITT 520
K +G RK ++ R E LR C+ + +L + PES+ +YL++KE
Sbjct: 1476 KLQGRARKTELHGFIRANAEMVLRSPECF--IKILKDCCVLGHFTPESEHYYLELKESLP 1533
Query: 521 GTLQ 532
G LQ
Sbjct: 1534 GVLQ 1537
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 27.5 bits (58), Expect = 1.9
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +2
Query: 356 SERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKEITTGT 526
S KQ + KE + +LREIC ++ L K L A V+ E+ TG+
Sbjct: 87 SSVKQSLKKELTIGDLSQLREICPQIIELNYKSLASLALEINKNVYTDLNPELYTGS 143
>SPAC16A10.08c |mug74|SPAC589.01c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 285
Score = 27.5 bits (58), Expect = 1.9
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +1
Query: 31 FSAREKLILC-----LNLLVQIHFSPSDKGISELVLFHRPRCPSTGKNWCNVPNWPNKLS 195
FS +E ILC L+L+V + ++ S+ + F +PR K N WPN+ S
Sbjct: 39 FSDKENSILCKQLKELDLVVSSNKEFLNEKTSDQISFLKPRETVVEKKLANGSIWPNETS 98
Query: 196 DM 201
+
Sbjct: 99 HL 100
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/56 (25%), Positives = 23/56 (41%)
Frame = +3
Query: 114 ISPLPSSTMSVDREELVQRAKLAEQAERYDDMAAAMKEVTETGVELSTRRGTSFQL 281
I L S D +Q E+Y D AA + ++ +G + R+G+ L
Sbjct: 6 IIKLLEQVQSADPNSRIQAELGLRDLEKYHDFAAKLTDIASSGASVPLRQGSLIYL 61
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 27.1 bits (57), Expect = 2.5
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = +2
Query: 212 GRDEGSDGNRRRT*HEERNLLSVAYKNVVGARRSSWRVISSIEQKTEGSE---RKQQMAK 382
GR+ S G H + SV+ + +R S+ S E + E SE R+Q++ +
Sbjct: 341 GRNAASSGPS----HAKPRSTSVSSEERSRSRAGSFSHHSESENEDEDSEAFRRRQELRR 396
Query: 383 EYRVKVEKELR 415
E R + EK+LR
Sbjct: 397 ERRRQAEKDLR 407
>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1185
Score = 27.1 bits (57), Expect = 2.5
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 496 PQNERDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTSPQH 642
P N R R + GE RH VED + A + +++ + P +P H
Sbjct: 1071 PLNPRTGQREVYFELNGENRHVTVEDKKAAIE---TVTRPRADPGNPGH 1116
>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 27.1 bits (57), Expect = 2.5
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Frame = +2
Query: 320 RVISSIEQKTEGSERKQQMAKEYRVKVEKE-LREICYDVLGL--LDKHL---IPKASNPE 481
+V+SS + E S + + R E E L E+ +V L +D+ +P+ NP
Sbjct: 263 KVLSSSSEDDESSSPEDLLKPIIRSTEEMENLNELEQEVQDLDPIDEGFEEKVPRFRNPS 322
Query: 482 SKVFYLKMKEI---TTGTLQKWPQEKPDILL 565
K FY K+ + + L+ EK D L+
Sbjct: 323 KKAFYEKLHSLRNRSYSKLESLTSEKSDTLI 353
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 287 KNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVE 403
KN+ S+ R +SS + K +E + M +Y K+E
Sbjct: 350 KNLENDEESTLRALSSFQSKIRNAEDEDVMDSQYGSKIE 388
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 341 QKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPK 466
+K + + KEY K +++LR+ D+ LL KH I +
Sbjct: 328 EKQRSKDEYASLYKEYTRKEQEKLRKQNDDLQNLLSKHRISR 369
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +2
Query: 275 SVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKE 409
S +Y + G S W+ I ++ K+ G +R ++ Y +KE
Sbjct: 61 SFSYPFLKGKSDSPWQAIQLLDFKSSGQQRAAYYSERYHSFRDKE 105
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 25.4 bits (53), Expect = 7.7
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +1
Query: 43 EKLILCLNLLVQIHFSPSDKGISELVLFHRPRCPSTGKNWCNVPNW 180
EKL+ C HF +G+ + L RC +T CNVP W
Sbjct: 683 EKLVACTT-----HFY---EGVRKSALSSLWRCATTYYKVCNVPQW 720
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 7.7
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +2
Query: 359 ERKQQMAKEYRVKVEKELREICYDV--LGLLDKHLIPKASNPE 481
E++Q A +YR+KVE+ +I V + L+ L + SNPE
Sbjct: 85 EQEQNEANDYRLKVERLEHKISDYVQEINSLNSQLQIQKSNPE 127
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,833,723
Number of Sequences: 5004
Number of extensions: 57107
Number of successful extensions: 170
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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