Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060600.seq
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553... 120 1e-27
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803... 117 8e-27
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065... 116 2e-26
03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629... 115 4e-26
11_06_0036 + 19474848-19475188,19475696-19475774,19475880-194760... 113 1e-25
08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448... 106 1e-23
11_06_0360 - 22699524-22699529,22699865-22699899,22700650-227007... 83 2e-16
01_01_0767 + 5931031-5931281,5931414-5931594,5932020-5932129,593... 75 5e-14
11_08_0071 + 28153043-28153555 31 0.84
06_01_0917 - 7077934-7080339 30 2.0
01_06_0919 - 32993752-32993856,32994383-32994592,32994666-329952... 30 2.0
03_02_0670 - 10303538-10303930,10304349-10305444,10305831-10306228 29 2.6
08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034 29 3.4
08_02_0456 - 17362080-17364156,17364853-17364942,17372615-173733... 29 3.4
10_06_0107 + 10840633-10841200,10841364-10841488,10856838-10857380 28 6.0
>02_04_0360 +
22353057-22353691,22354716-22355144,22355233-22355311,
22355472-22355594,22356256-22356372,22356636-22356833
Length = 526
Score = 120 bits (288), Expect = 1e-27
Identities = 58/86 (67%), Positives = 70/86 (81%), Gaps = 2/86 (2%)
Frame = +2
Query: 257 EERNLLSVAYKNVVGARRSSWRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYD 430
EERNLLSVAYKNV+GARR+SWR+ISSIEQK E G+E + + KEYR K+E EL +IC
Sbjct: 265 EERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDRCTLIKEYRGKIETELSKICDG 324
Query: 431 VLGLLDKHLIPKASNPESKVFYLKMK 508
+L LLD HL+P ++ PESKVFYLKMK
Sbjct: 325 ILKLLDSHLVPSSTAPESKVFYLKMK 350
Score = 44.8 bits (101), Expect = 6e-05
Identities = 20/42 (47%), Positives = 27/42 (64%)
Frame = +1
Query: 511 DYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTSP 636
DYYRYLAE TG R E++ AY+ A +I+ A++ PT P
Sbjct: 352 DYYRYLAEFKTGAERKDAAENTMVAYKAAQDIALAELPPTHP 393
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = +3
Query: 129 SSTMSVDREELVQRAKLAEQAERYDDMAAAMKEVTET 239
S + REE V AKLAEQAERY++M M++V +T
Sbjct: 220 SQPAELSREENVYMAKLAEQAERYEEMVEFMEKVAKT 256
>04_04_0141 +
23079516-23079925,23080006-23080084,23080204-23080326,
23081655-23081771,23081886-23081945
Length = 262
Score = 117 bits (282), Expect = 8e-27
Identities = 56/86 (65%), Positives = 70/86 (81%), Gaps = 2/86 (2%)
Frame = +2
Query: 257 EERNLLSVAYKNVVGARRSSWRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYD 430
EERNLLSVAYKNV+GARR+SWR+ISSIEQK E G+E + + K+YR K+E EL +IC
Sbjct: 47 EERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDRVTLIKDYRGKIETELTKICDG 106
Query: 431 VLGLLDKHLIPKASNPESKVFYLKMK 508
+L LL+ HL+P ++ PESKVFYLKMK
Sbjct: 107 ILKLLESHLVPSSTAPESKVFYLKMK 132
Score = 44.8 bits (101), Expect = 6e-05
Identities = 20/42 (47%), Positives = 27/42 (64%)
Frame = +1
Query: 511 DYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTSP 636
DYYRYLAE TG R E++ AY+ A +I+ A++ PT P
Sbjct: 134 DYYRYLAEFKTGAERKDAAENTMVAYKAAQDIALAELPPTHP 175
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = +3
Query: 129 SSTMSVDREELVQRAKLAEQAERYDDMAAAMKEVTET 239
S+ + REE V AKLAEQAERY++M M++V +T
Sbjct: 2 SAQAELSREENVYMAKLAEQAERYEEMVEFMEKVAKT 38
>08_02_0753 -
20805672-20805731,20805825-20805941,20806394-20806516,
20806700-20806778,20806867-20807258
Length = 256
Score = 116 bits (279), Expect = 2e-26
Identities = 56/86 (65%), Positives = 68/86 (79%), Gaps = 2/86 (2%)
Frame = +2
Query: 257 EERNLLSVAYKNVVGARRSSWRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYD 430
EERNLLSVAYKNV+GARR+SWR++SSIEQK E G+E + KEYR K+E EL +IC
Sbjct: 41 EERNLLSVAYKNVIGARRASWRIVSSIEQKEEGRGNEEHVTLIKEYRGKIEAELSKICDG 100
Query: 431 VLGLLDKHLIPKASNPESKVFYLKMK 508
+L LLD HL+P ++ ESKVFYLKMK
Sbjct: 101 ILKLLDSHLVPSSTAAESKVFYLKMK 126
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +1
Query: 511 DYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTSP 636
DY+RYLAE TG R E + AY+ A +I+ A + PT P
Sbjct: 128 DYHRYLAEFKTGAERKEAAESTMVAYKAAQDIALADLAPTHP 169
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/32 (56%), Positives = 24/32 (75%)
Frame = +3
Query: 144 VDREELVQRAKLAEQAERYDDMAAAMKEVTET 239
+ REE V AKLAEQAERY++M M++V +T
Sbjct: 1 MSREENVYMAKLAEQAERYEEMVEYMEKVAKT 32
>03_05_0881 +
28461857-28462263,28462357-28462435,28462798-28462920,
28463632-28463748,28463861-28463917
Length = 260
Score = 115 bits (276), Expect = 4e-26
Identities = 57/86 (66%), Positives = 67/86 (77%), Gaps = 2/86 (2%)
Frame = +2
Query: 257 EERNLLSVAYKNVVGARRSSWRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYD 430
EERNLLSVAYKNV+GARR+SWR+ISSIEQK E G+E KEYR ++E EL +IC
Sbjct: 46 EERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEAYVASIKEYRSRIETELSKICDG 105
Query: 431 VLGLLDKHLIPKASNPESKVFYLKMK 508
+L LLD HL+P A+ ESKVFYLKMK
Sbjct: 106 ILKLLDSHLVPSATAAESKVFYLKMK 131
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = +3
Query: 132 STMSVDREELVQRAKLAEQAERYDDMAAAMKEVTET 239
S REE V AKLAEQAERY++M M++V +T
Sbjct: 2 SPAEASREENVYMAKLAEQAERYEEMVEFMEKVAKT 37
Score = 37.1 bits (82), Expect = 0.013
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +1
Query: 511 DYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTSP 636
DY+RYLAE +G R E++ AY+ A +I+ A + T P
Sbjct: 133 DYHRYLAEFKSGAERKEAAENTLVAYKSAQDIALADLPTTHP 174
>11_06_0036 +
19474848-19475188,19475696-19475774,19475880-19476002,
19476970-19477086,19477169-19477228
Length = 239
Score = 113 bits (272), Expect = 1e-25
Identities = 59/97 (60%), Positives = 67/97 (69%), Gaps = 2/97 (2%)
Frame = +2
Query: 224 GSDGNRRRT*HEERNLLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMA--KEYRVK 397
G+ G T EERNLLSVAYKNV+GARR+SWR+ISSIEQK EG A + YR K
Sbjct: 14 GASGGEELT-VEERNLLSVAYKNVIGARRASWRIISSIEQKEEGRGNDAHAATIRSYRGK 72
Query: 398 VEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMK 508
+E EL IC +L LLD HL+P A ESKVFYLKMK
Sbjct: 73 IEAELARICDGILALLDSHLVPSAGAAESKVFYLKMK 109
Score = 41.9 bits (94), Expect = 5e-04
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = +1
Query: 511 DYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTSP 636
DY+RYLAE +G+ R E + AY+ A +I+ A + PT P
Sbjct: 111 DYHRYLAEFKSGDERKQAAESTMNAYKAAQDIALADLAPTHP 152
>08_02_1026 +
23743186-23743686,23743793-23743915,23744734-23744850,
23744948-23745001
Length = 264
Score = 106 bits (255), Expect = 1e-23
Identities = 52/86 (60%), Positives = 65/86 (75%), Gaps = 2/86 (2%)
Frame = +2
Query: 257 EERNLLSVAYKNVVGARRSSWRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYD 430
EERNLLSVAYKNV+GARR+SWR++SSIEQK E G+ A+ YR +VE EL IC
Sbjct: 51 EERNLLSVAYKNVIGARRASWRIVSSIEQKEEGRGAAGHAAAARSYRARVEAELSNICAG 110
Query: 431 VLGLLDKHLIPKASNPESKVFYLKMK 508
+L LLD+ L+P A+ ++KVFYLKMK
Sbjct: 111 ILRLLDERLVPAAAAVDAKVFYLKMK 136
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +1
Query: 511 DYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTSP 636
DY+RYLAE TG R + + AYQ A +I+ ++ PT P
Sbjct: 138 DYHRYLAEFKTGAERKDAADATLAAYQAAQDIAMKELSPTHP 179
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/27 (62%), Positives = 22/27 (81%)
Frame = +3
Query: 150 REELVQRAKLAEQAERYDDMAAAMKEV 230
REE+V AKLAEQAERY++M M++V
Sbjct: 10 REEMVYMAKLAEQAERYEEMVEFMEKV 36
>11_06_0360 -
22699524-22699529,22699865-22699899,22700650-22700792,
22701165-22701220,22701367-22701454,22702737-22703037,
22704365-22704428
Length = 230
Score = 83.0 bits (196), Expect = 2e-16
Identities = 37/84 (44%), Positives = 55/84 (65%)
Frame = +2
Query: 257 EERNLLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVL 436
EER L SV +K +GARR+SWR++ S+EQK ++ Y+ KVE ELR +C +VL
Sbjct: 40 EERLLFSVGFKKTIGARRASWRILESLEQKVTAGDQPGVTINGYKKKVEDELRAVCNEVL 99
Query: 437 GLLDKHLIPKASNPESKVFYLKMK 508
++ H +P A++ E+ VF+ KMK
Sbjct: 100 SIIAIHCLPLANSGENVVFFYKMK 123
Score = 44.8 bits (101), Expect = 6e-05
Identities = 21/45 (46%), Positives = 29/45 (64%)
Frame = +3
Query: 147 DREELVQRAKLAEQAERYDDMAAAMKEVTETGVELSTRRGTSFQL 281
+RE++V+ AKLAEQAERYDDM MK + V++S F +
Sbjct: 3 EREKVVRLAKLAEQAERYDDMVEFMKTLARMDVDMSAEERLLFSV 47
Score = 34.3 bits (75), Expect = 0.091
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 511 DYYRYLAEVATGETRHSVVEDSQKAYQ 591
DYYRYLAE +TG + + + S AYQ
Sbjct: 125 DYYRYLAEFSTGTEKKAATDQSLMAYQ 151
>01_01_0767 +
5931031-5931281,5931414-5931594,5932020-5932129,
5932212-5932360,5932686-5932738,5933168-5933260
Length = 278
Score = 74.9 bits (176), Expect = 5e-14
Identities = 35/67 (52%), Positives = 50/67 (74%), Gaps = 2/67 (2%)
Frame = +2
Query: 257 EERNLLSVAYKNVVGARRSSWRVISSIE--QKTEGSERKQQMAKEYRVKVEKELREICYD 430
EERNLLSV YKN++GA+R++ R+I SIE ++T+G E + EYR KVE E+ +IC D
Sbjct: 18 EERNLLSVGYKNLIGAKRAAMRIIGSIELKEETKGKESHVRQTAEYRRKVEAEMDKICCD 77
Query: 431 VLGLLDK 451
V+ ++DK
Sbjct: 78 VINIIDK 84
Score = 31.9 bits (69), Expect = 0.48
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +1
Query: 511 DYYRYLAEVATGETRHSVVEDSQKAYQ 591
DYYRYLAE TG + V E S AY+
Sbjct: 87 DYYRYLAEFKTGTEKIEVSELSLNAYE 113
>11_08_0071 + 28153043-28153555
Length = 170
Score = 31.1 bits (67), Expect = 0.84
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 134 GRWKRTNSLMPLSEGEKCI*TSKFKHNISFSLALNDILVLT 12
G W R N+ PL + + H++S S++L +ILV T
Sbjct: 130 GTWLRANTSCPLCRADTTPSSGDLHHHLSISVSLEEILVRT 170
>06_01_0917 - 7077934-7080339
Length = 801
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +1
Query: 493 LPQNERDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTSPQHTHLFSSVFIR 672
LP + + ++ YL E+A V + A AFE S A P+ H++ S +
Sbjct: 54 LPGSYKLWHAYLTELADAARAMPVAHRAHAALNSAFERSLAAGMSRMPRVWHMYFSALLD 113
Query: 673 KRV 681
+R+
Sbjct: 114 QRL 116
>01_06_0919 -
32993752-32993856,32994383-32994592,32994666-32995220,
32995705-32995926,32996381-32996511,32997456-32998353,
32998453-32998530,32998612-32998683,32998728-32998763,
32999413-33000353,33000531-33000659,33000751-33000894,
33000994-33001060,33002434-33002502,33003144-33003278
Length = 1263
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 550 TRHSVVEDSQKAYQDAFEISKAKMQPTSPQHTHLF 654
+R+S ED+ K + DA + + M P S QH H F
Sbjct: 362 SRNSTTEDADKYFGDAPKHLQNSMFPVSTQHQHSF 396
>03_02_0670 - 10303538-10303930,10304349-10305444,10305831-10306228
Length = 628
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 147 DREELVQRAKLAEQAERYDDMAAAMKEVTETGVELSTRRGTSFQLLIRMS 296
D ++++ A+L EQA D A +++EV + GT FQL S
Sbjct: 140 DMKDVLLHARLVEQAAGEDQPAVSIEEVPGSNGRGGANEGTVFQLTFACS 189
>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
Length = 930
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Frame = +2
Query: 407 ELREICYDVLGLLDKHLIPKASNPES-----KVFYLKMKEITTGTLQ 532
+LRE+ YD+ LD+ L+ A+ P S K+ K+K T G ++
Sbjct: 71 DLRELSYDMEDSLDRFLVKSAAEPGSCKKLFKILLTKIKGSTNGIVK 117
>08_02_0456 -
17362080-17364156,17364853-17364942,17372615-17373318,
17373421-17373451,17374366-17374448,17374517-17374640,
17376427-17376560
Length = 1080
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Frame = +2
Query: 404 KELREICYDVLGLLDK---HLIPKASNPESKVFYLKMKEITTGTLQK 535
+E+RE+ YD+ LD+ H++ ++NP+ F +K + + T T+ +
Sbjct: 202 REVRELSYDIEDSLDEFMLHVVDGSANPDG--FIVKCRNLLTKTMAR 246
>10_06_0107 + 10840633-10841200,10841364-10841488,10856838-10857380
Length = 411
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/81 (25%), Positives = 37/81 (45%)
Frame = +2
Query: 404 KELREICYDVLGLLDKHLIPKASNPESKVFYLKMKEITTGTLQKWPQEKPDILL*RIHRK 583
KE+RE+ YDV LD+ + A N ++ + K+ + + + + R
Sbjct: 70 KEVRELSYDVDDFLDEIALAAADNADAILIAGKVSKFRERAQEARQRRRRT----RYGLC 125
Query: 584 HTKMLLKSARRKCSPLHPSTR 646
H +S+RR+CS +TR
Sbjct: 126 HHPTSRRSSRRRCSSTSITTR 146
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,531,472
Number of Sequences: 37544
Number of extensions: 382302
Number of successful extensions: 1224
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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