Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060600.seq
         (682 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)             124   5e-29
SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.)             103   2e-22
SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44)             98   5e-21
SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)                      92   4e-19
SB_34218| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   2e-06
SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_13921| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_5094| Best HMM Match : Fibrinogen_C (HMM E-Value=0.24)              29   4.6  
SB_40385| Best HMM Match : Kelch_1 (HMM E-Value=0)                     28   6.1  
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)                     28   6.1  
SB_43369| Best HMM Match : S-antigen (HMM E-Value=2.4)                 28   8.0  
SB_42896| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_19000| Best HMM Match : Ery_res_leader2 (HMM E-Value=0.69)          28   8.0  
SB_5535| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.0  

>SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score =  124 bits (300), Expect = 5e-29
 Identities = 61/84 (72%), Positives = 68/84 (80%)
 Frame = +2

Query: 257 EERNLLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVL 436
           EERNLLSVAYKNVVGA+RSSWRVISSIEQK EGSERK+Q  + YR  +E EL E+C  VL
Sbjct: 18  EERNLLSVAYKNVVGAKRSSWRVISSIEQKLEGSERKKQNTETYRQTIENELNEVCETVL 77

Query: 437 GLLDKHLIPKASNPESKVFYLKMK 508
            LL+  LIP A + ESKVFYLKMK
Sbjct: 78  KLLESKLIPNAQSTESKVFYLKMK 101



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
 Frame = +1

Query: 511 DYYRYLAEVATGETRHSVVEDSQKAYQDAFEISK--AKMQPTSP 636
           DYYRY  EVA  + R  VV+ + KAY +A EI++   K+ PT P
Sbjct: 103 DYYRYEGEVAGADRRREVVQKAMKAYSEAQEIAEKDPKLPPTDP 146


>SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score =  103 bits (246), Expect = 2e-22
 Identities = 50/84 (59%), Positives = 67/84 (79%)
 Frame = +2

Query: 257 EERNLLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVL 436
           EERNLLSV+YKN+VG RRSSWRVISSIE+KT  S     + K+Y+  +EKEL+++C +VL
Sbjct: 120 EERNLLSVSYKNIVGQRRSSWRVISSIEEKTAESS-SLAIVKKYKACIEKELKDLCKEVL 178

Query: 437 GLLDKHLIPKASNPESKVFYLKMK 508
           G+L++ LIP A + E+KVFY K+K
Sbjct: 179 GILER-LIPGAEDEENKVFYFKLK 201



 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 22/39 (56%), Positives = 28/39 (71%)
 Frame = +3

Query: 138 MSVDREELVQRAKLAEQAERYDDMAAAMKEVTETGVELS 254
           M V RE L+  AKL+EQ +RYD+MA  MKEV+E   +LS
Sbjct: 80  MMVVRETLIYNAKLSEQCDRYDEMAKIMKEVSEKYPKLS 118


>SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44)
          Length = 251

 Score = 98.3 bits (234), Expect = 5e-21
 Identities = 49/86 (56%), Positives = 65/86 (75%), Gaps = 3/86 (3%)
 Frame = +2

Query: 257 EERNLLSVAYKNVVGARRSSWRVISSIEQKTE--GSE-RKQQMAKEYRVKVEKELREICY 427
           E+RNLLSVAYKNV+GARR+SWR+I+SIEQK E  G +  K +M + YR  +E+EL+ IC 
Sbjct: 40  EDRNLLSVAYKNVIGARRASWRIITSIEQKEESKGEDMAKLEMIRNYRKTIEEELKTICG 99

Query: 428 DVLGLLDKHLIPKASNPESKVFYLKM 505
           ++L LLD  LI  + + ESKVFY K+
Sbjct: 100 EILSLLDDSLIKNSQSEESKVFYNKI 125



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 26/37 (70%), Positives = 29/37 (78%)
 Frame = +3

Query: 147 DREELVQRAKLAEQAERYDDMAAAMKEVTETGVELST 257
           D+EE V  AKLAEQAERYDDM  +MKEV + G ELST
Sbjct: 3   DKEEHVYMAKLAEQAERYDDMVNSMKEVAKMGTELST 39


>SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)
          Length = 248

 Score = 91.9 bits (218), Expect = 4e-19
 Identities = 49/87 (56%), Positives = 60/87 (68%), Gaps = 3/87 (3%)
 Frame = +2

Query: 257 EERNLLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVL 436
           EERNLLSVAYKNVVGARRSSWRVISS+EQK    E    + K+YR  +  EL   C +VL
Sbjct: 47  EERNLLSVAYKNVVGARRSSWRVISSMEQK--APEEMAALTKKYREDITNELNGKCAEVL 104

Query: 437 GLLDKHLIPKAS---NPESKVFYLKMK 508
            +L+ +L+       N E+KVFYLKM+
Sbjct: 105 DILENYLLKDGQDDINTEAKVFYLKMR 131



 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 23/43 (53%), Positives = 28/43 (65%)
 Frame = +3

Query: 126 PSSTMSVDREELVQRAKLAEQAERYDDMAAAMKEVTETGVELS 254
           P+      REEL+  AK+AEQAERYDDM  AM  VT+ G  L+
Sbjct: 3   PNFVSKCSREELIHLAKMAEQAERYDDMVNAMSAVTKEGKPLN 45



 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 21/44 (47%), Positives = 29/44 (65%)
 Frame = +1

Query: 511 DYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTSPQH 642
           DY+RYL EVA G++R   +E S++AY+DA     AK +  SP H
Sbjct: 133 DYHRYLVEVAEGDSRKENIEKSREAYKDA----SAKAEELSPSH 172


>SB_34218| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
 Frame = +2

Query: 257 EERNLLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAK--EYRVKVEKELREICYD 430
           E RNLLSV YKNVVG++R +WR +     ++    R  Q+    +Y+ K+E EL+ +C +
Sbjct: 226 EHRNLLSVGYKNVVGSKRFAWRHLHHDALQSGRYIRDSQLKGIIKYKEKIEMELKTLCRE 285

Query: 431 VL 436
           +L
Sbjct: 286 IL 287



 Score = 38.3 bits (85), Expect = 0.006
 Identities = 19/39 (48%), Positives = 24/39 (61%)
 Frame = +3

Query: 138 MSVDREELVQRAKLAEQAERYDDMAAAMKEVTETGVELS 254
           M   R ELVQ AKLAEQ ER++D+   MK+  E    L+
Sbjct: 186 MQDSRNELVQLAKLAEQTERFEDVILYMKKAIEINPSLN 224


>SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1126

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
 Frame = +2

Query: 320  RVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYL 499
            R++  IE+K E  E  ++ AKE + + E+E + IC          L+ + +  E +   L
Sbjct: 919  RIMKEIEEK-EKKEEAERKAKEEKEREERERKRIC---------QLLKEKAEQERREREL 968

Query: 500  KMKE--ITTGTLQKWPQEKPDILL*RIHRKHTKMLLKSARRKCSP 628
            K +E  +     Q   +E+   L   + RK  +  LK    K  P
Sbjct: 969  KAREEKLRLAREQMMREERERTLKLELERKRMEERLKDQASKNDP 1013


>SB_13921| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 688

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 517 YRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTSPQHTH 648
           + Y AE      RHS  E++  +++ A     A  + T P+H H
Sbjct: 459 HAYSAESKDSGRRHSYGENASHSWEKASSTGSAPSKRTQPRHRH 502


>SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1234

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +2

Query: 308 RSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASN 475
           +  W ++S  E+    +ER++Q   E +VK E++ R+   ++  +   HL  K SN
Sbjct: 338 KHQWNLLSEDEKNKIKAERRKQKRLELKVKREEKERKRLEELKRVSFAHLGMKLSN 393


>SB_5094| Best HMM Match : Fibrinogen_C (HMM E-Value=0.24)
          Length = 315

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = +1

Query: 520 RYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTSPQHTH 648
           RYLAE  T   +      S +   D + I  AKMQ    Q TH
Sbjct: 153 RYLAEFCTKSWQFDAPRHSNEPNWDDYRIELAKMQHLVKQSTH 195


>SB_40385| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 823

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -3

Query: 641 CWGEVGCIFALLISKA 594
           CWG+VGC+ AL+ S A
Sbjct: 687 CWGQVGCLKALVASGA 702


>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
          Length = 783

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +2

Query: 365 KQQMAKEYRVKVEKELREICYDVLGLLDKHLIPK 466
           K++M ++Y  K+EKE+    Y+++  L K ++ K
Sbjct: 292 KEEMKEKYDGKIEKEMSGAIYEIISRLMKAVVGK 325


>SB_43369| Best HMM Match : S-antigen (HMM E-Value=2.4)
          Length = 407

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
 Frame = +2

Query: 305 RRSSWRVISSIEQKT--EGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNP 478
           +RS+   +    +KT  E  E+    A  +  +V   L  I  D + L D+HL+    + 
Sbjct: 3   QRSNQNSVRDWVKKTTAESREKTTYAAPSWGSQVLPHLHPIMPDRMYLQDQHLLIAVKSV 62

Query: 479 ESKVFYLKMKEITTGTLQK 535
           ES   Y KMK+   G   K
Sbjct: 63  ESDESYGKMKKSGKGKESK 81


>SB_42896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 994

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = +3

Query: 114 ISPLPSSTMSVDREELVQRAKLAEQAERYDDMA----AAMKEVTETGVELSTR 260
           +SPLPS+      +E+V   KLAE+ E  ++++     + KE  E  +E   R
Sbjct: 643 VSPLPSTATEDQMQEVVDSNKLAEKKEVTEEVSPVKPLSTKESKENALEEKER 695


>SB_19000| Best HMM Match : Ery_res_leader2 (HMM E-Value=0.69)
          Length = 310

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 526 LAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTSPQHT 645
           LA    G+ RH +      A QDA  I  A+++PT P  T
Sbjct: 267 LASYTAGDMRHDLDLRLPAANQDACYILHARIRPTPPDTT 306


>SB_5535| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +2

Query: 398 VEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKEITT 520
           ++   R      L    +HL+P+A +  S+ F  ++KE++T
Sbjct: 50  LDSNSRHFVPQALDSTSRHLVPRALDSTSRHFVFRVKEVST 90


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,425,328
Number of Sequences: 59808
Number of extensions: 436551
Number of successful extensions: 1243
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1239
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)