Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060600.seq
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    27   0.22 
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    23   2.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.2  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 583  LSVNPLQQNVWFLLWPLLQGTCSNLFHFEVKHF 485
            L VN  + N+ + +WP+     S LFH+ V  F
Sbjct: 1009 LDVNTPKGNMQWKIWPMKGEEKSRLFHYSVVPF 1041


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/34 (23%), Positives = 15/34 (44%)
 Frame = -3

Query: 623 CIFALLISKASWYAFCESSTTECLVSPVATSARY 522
           CI   + S   W  +C S+   C+ +  +   R+
Sbjct: 38  CIHPTVFSVLFWLGYCNSAINPCIYALFSKDFRF 71


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/34 (23%), Positives = 15/34 (44%)
 Frame = -3

Query: 623 CIFALLISKASWYAFCESSTTECLVSPVATSARY 522
           CI   + S   W  +C S+   C+ +  +   R+
Sbjct: 486 CIHPTVFSVLFWLGYCNSAINPCIYALFSKDFRF 519


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 127 HRPRCPSTGKNWCN 168
           HRP C S GK + N
Sbjct: 114 HRPVCASNGKIYAN 127


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +2

Query: 338 EQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKAS-NPESKVFYLKMKEI 514
           E++T  +E+  +M K Y   ++KE +++  ++      + +  A     +++F  K    
Sbjct: 441 EKRTIENEQLNRMYKSYPNYIDKETKDMNLEISTRPKSNTVENACVLKNTEIFKDKSDWF 500

Query: 515 TTGTLQKWPQE 547
               + KW Q+
Sbjct: 501 DYSEVSKWVQK 511


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,978
Number of Sequences: 438
Number of extensions: 3951
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)