Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060599.seq
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.01 |apc10|SPBC1E8.06|anaphase-promoting complex subunit ...    84   2e-17
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    28   1.1  
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         26   5.8  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   7.7  

>SPBC1A4.01 |apc10|SPBC1E8.06|anaphase-promoting complex subunit
           Apc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 189

 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 35/78 (44%), Positives = 57/78 (73%), Gaps = 1/78 (1%)
 Frame = +2

Query: 257 LDESYTPSRISIRAGTHFNDLQEIEVIELIEPSGWEMIPIKDI-HDRPIRTYMIQIAVLS 433
           LDESYTPS + I AGT F DL+ +  +++ EP+GW  +P+ D   +  +  ++IQI +L+
Sbjct: 86  LDESYTPSTLRISAGTGFQDLEIVTTVQVEEPTGWVHVPVGDFGRNGLLDVHLIQIKILA 145

Query: 434 NHQNGRDTHMRQIKVHSP 487
           NHQ+G+D+H+R IK+++P
Sbjct: 146 NHQSGKDSHVRLIKIYAP 163



 Score = 67.7 bits (158), Expect = 1e-12
 Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 6/84 (7%)
 Frame = +3

Query: 21  MAGLEKDPLVYERSGTVR------EVGNHAIWSLSSCKPGFGIDQLRDDCMETYWQSDGQ 182
           MA + ++ L  ++S T +      ++GN A W+ SS K GF I  +RDD ++TYWQSDG 
Sbjct: 1   MAQIRQEALKKQKSETQKSTEGFVDIGNLAQWTCSSEKSGFPIRLVRDDNIDTYWQSDGS 60

Query: 183 LPHLVNIQFQKKTMVSHIYIYTDY 254
            PH ++I+F K+  + ++ +Y  Y
Sbjct: 61  QPHTIHIKFVKRVSIKYVSMYLQY 84


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 311 NDLQEIEVIELIEPSGWEMIPIKDIHD 391
           +D +EI+  E+ E S WEMI  +D  D
Sbjct: 692 DDFEEIDTDEIEEQSDWEMISNQDASD 718


>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 128

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 465 DRSKCIHHVNLPLLIK*V*KFFNCSIPTICHYKII*-FTFACWKECTLGGLSII 623
           ++ K IH +   L I  +  F N  +  +C+ K    F+F CW    LG + II
Sbjct: 25  EKYKIIHRL---LYISIIFLFLNYVVDIVCYVKNYNGFSFFCWVFLNLGVIGII 75


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 425  VLSNHQNGRDTHMRQIKVHSPCEPTSFD*ISLEIFQLFNSNNMPL 559
            ++ N QN  ++ +  I + S CEPT FD + L   Q   S N  +
Sbjct: 977  IVMNSQNISESSITSILL-SNCEPTGFDRLVLLGNQYLTSGNQDI 1020


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,957,856
Number of Sequences: 5004
Number of extensions: 63367
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)