Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060599.seq
         (682 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0246 + 28634530-28634735,28634841-28634901,28634996-286350...    88   5e-18

>05_07_0246 +
           28634530-28634735,28634841-28634901,28634996-28635088,
           28635326-28635391,28635506-28635576,28636225-28636329,
           28637065-28637134
          Length = 223

 Score = 88.2 bits (209), Expect = 5e-18
 Identities = 36/62 (58%), Positives = 46/62 (74%)
 Frame = +3

Query: 69  VREVGNHAIWSLSSCKPGFGIDQLRDDCMETYWQSDGQLPHLVNIQFQKKTMVSHIYIYT 248
           +RE+   A WS+SSCKPG G+  LRDD ++TYWQSDG  PHLVNIQFQKK  +  + +Y 
Sbjct: 36  MREMAKTAAWSVSSCKPGNGVASLRDDNLDTYWQSDGAQPHLVNIQFQKKVQLQLVVVYV 95

Query: 249 DY 254
           D+
Sbjct: 96  DF 97



 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 45/101 (44%), Positives = 60/101 (59%), Gaps = 24/101 (23%)
 Frame = +2

Query: 257 LDESYTPSRISIRAGTHFNDLQE----------------------IEVIELIEPSGWEMI 370
           LDESYTPS+IS+RAG  F++L+E                      I+ +EL +P GW  I
Sbjct: 99  LDESYTPSKISVRAGDGFHNLKEYIDIRLGRTGKLWQDFVSVNMEIKTVELSKPVGWVHI 158

Query: 371 PIKDIHDRP--IRTYMIQIAVLSNHQNGRDTHMRQIKVHSP 487
            +     R   I T+M+QI+VLSNH NGRDTH+RQIK++ P
Sbjct: 159 SLSGADPRETFIHTFMLQISVLSNHLNGRDTHIRQIKIYGP 199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,657,322
Number of Sequences: 37544
Number of extensions: 353701
Number of successful extensions: 754
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)