Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060599.seq
         (682 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6165| Best HMM Match : No HMM Matches (HMM E-Value=.)              116   2e-26
SB_57610| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_49841| Best HMM Match : Extensin_2 (HMM E-Value=0.29)               29   4.6  
SB_47085| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)        28   8.0  
SB_48497| Best HMM Match : THAP (HMM E-Value=0.00088)                  28   8.0  
SB_29103| Best HMM Match : APC10 (HMM E-Value=0.00051)                 28   8.0  

>SB_6165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 223

 Score =  116 bits (278), Expect = 2e-26
 Identities = 52/84 (61%), Positives = 69/84 (82%), Gaps = 1/84 (1%)
 Frame = +2

Query: 260 DESYTPSRISIRAGTHFNDLQEIEVIELIEPSGWEMIPIKDIHDRPIRTYMIQIAVLSNH 439
           DESYTPS+IS+RAG  F+DL +IE+I+L EP+GW  + + +  DRPIRTYM+Q+AVL+NH
Sbjct: 125 DESYTPSKISVRAGNSFHDLHQIELIQLDEPTGWLTVSLNE-GDRPIRTYMLQVAVLANH 183

Query: 440 QNGRDTHMRQIKVHSP-CEPTSFD 508
           QNGRDTHMRQIK+ +P C+  + D
Sbjct: 184 QNGRDTHMRQIKIFAPLCDAVNPD 207



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 34/81 (41%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
 Frame = +3

Query: 21  MAGLEKDPLVYERS---GTVREVGNHAIWSLSSCKPGFGIDQLRDDCMETYWQSDGQLPH 191
           MAG  +D +  E +   G +RE+G+ A W       G  +        ETYWQSDG  PH
Sbjct: 50  MAGRIEDSVAGEENKNNGKLREIGDQAAWLWYRAAEGCNL--------ETYWQSDGPQPH 101

Query: 192 LVNIQFQKKTMVSHIYIYTDY 254
           L+NIQF++KT +  I IY DY
Sbjct: 102 LINIQFKRKTAIQKISIYADY 122


>SB_57610| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 504

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 132 DQLRDDCMETYWQSDG-QLPHLVNIQFQKKTMVSHIYIYTD 251
           D L D    TYW+SDG Q  H V +  +   ++  +YI  D
Sbjct: 175 DCLTDGDPVTYWESDGNQGRHWVRLSIKPGVIIKRLYIELD 215


>SB_49841| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
          Length = 1841

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 566  NIIYFCLLERMYSWWVVHNQTLLVILFTKNHFVS 667
            N+   CL+ R Y+WW+  N  LL ++   N +++
Sbjct: 1194 NLALLCLM-RQYNWWLAWNPALLCLMRQYNWWLA 1226


>SB_47085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
 Frame = +3

Query: 69  VREVGNHAIWSLSSCKPGFGIDQLRDDCMETYWQSDGQLPHLVNI-----QFQKKTMVSH 233
           V E+    + S+       G D+L        +  D  LPH V++     QF KKT +S 
Sbjct: 228 VLEISLPGLKSIKDTALDVGEDRLLLHVDPNRYHLDLDLPHNVDVETCGAQFNKKTKMSD 287

Query: 234 IYIYTDY 254
           +Y Y  Y
Sbjct: 288 LYFYLTY 294


>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
          Length = 2122

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +2

Query: 302  THFNDLQEIEVIELIEPSGWEMIPIKDIHDRPIRTYMIQIAVLSNHQNGRDTHMRQIKV 478
            T  ND  + E+IEL E +  +   + +I+DR    Y +QIA L N    +   + Q+++
Sbjct: 1863 TKENDTLQKEIIELREENISQKSKLYEINDR----YELQIAELKNDNEIKQDKIEQLEI 1917


>SB_48497| Best HMM Match : THAP (HMM E-Value=0.00088)
          Length = 866

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 383 IHDRPIRTYMIQIAVLSNHQNGRDTHMRQIKV 478
           IHDRP  +Y  +IA +S+H        RQ+++
Sbjct: 671 IHDRPSHSYAKEIANISSHVKSGTPLTRQLRL 702


>SB_29103| Best HMM Match : APC10 (HMM E-Value=0.00051)
          Length = 717

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = +2

Query: 260 DESYTPSRISIRAG---THFNDLQEIEVIELIEPSGWEMIPIKDIHDRPIRTYMIQIAVL 430
           D+SY P  + + AG   TH  ++ ++ +   +          K+       + + QI + 
Sbjct: 141 DQSYMPQHVVVMAGRDETHLREIADVRIPRYLHNFTQSYPTHKEF---TFNSRLFQINIK 197

Query: 431 SNHQNGRDTHMRQIK 475
             H +G DT +R +K
Sbjct: 198 RCHSDGCDTRIRGLK 212


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,065,178
Number of Sequences: 59808
Number of extensions: 432852
Number of successful extensions: 1529
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1527
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)